Jakob Hull Havgaard - researchr alias

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Viewing Publication 1 - 11 from 11

2020

Using GPU to accelerate the pairwise structural RNA alignment with base pair probabilitiesDaniel Sundfeld, George Teodoro, Jakob Hull Havgaard, Jan Gorodkin, Alba C. M. A. Melo. concurrency, 32(10), 2020. [doi]

2017

RNAscClust: clustering RNA sequences using structure conservation and graph based motifsMilad Miladi, Alexander Junge, Fabrizio Costa, Stefan E. Seemann, Jakob Hull Havgaard, Jan Gorodkin, Rolf Backofen. bioinformatics, 33(14):2089-2096, 2017. [doi]

CUDA-Sankoff: Using GPU to Accelerate the Pairwise Structural RNA AlignmentDaniel Sundfeld, Jakob Hull Havgaard, Jan Gorodkin, Alba Cristina Magalhaes Alves de Melo. pdp 2017: 295-302 [doi]

2016

Foldalign 2.5: multithreaded implementation for pairwise structural RNA alignmentDaniel Sundfeld, Jakob Hull Havgaard, Alba Cristina Magalhaes Alves de Melo, Jan Gorodkin. bioinformatics, 32(8):1238-1240, 2016. [doi]

2009

Structural profiles of human miRNA families from pairwise clusteringBogumil Kaczkowski, Elfar Torarinsson, Kristin Reiche, Jakob Hull Havgaard, Peter F. Stadler, Jan Gorodkin. bioinformatics, 25(3):291-294, 2009. [doi]

2007

Fast Pairwise Structural RNA Alignments by Pruning of the Dynamical Programming MatrixJakob Hull Havgaard, Elfar Torarinsson, Jan Gorodkin. ploscb, 3(10), 2007. [doi]

Multiple structural alignment and clustering of RNA sequencesElfar Torarinsson, Jakob Hull Havgaard, Jan Gorodkin. bioinformatics, 23(8):926-932, 2007. [doi]

2006

MicroRNA sequence motifs reveal asymmetry between the stem armsJan Gorodkin, Jakob Hull Havgaard, Milena Ensterö, Milena Sawera, P. Jensen, M. Öhman, Merete Fredholm. CANDC, 30(4):249-254, 2006. [doi]

2005

The FOLDALIGN web server for pairwise structural RNA alignment and mutual motif searchJakob Hull Havgaard, Rune B. Lyngsø, Jan Gorodkin. nar, 33(Web-Server-Issue):650-653, 2005. [doi]

Pairwise local structural alignment of RNA sequences with sequence similarity less than 40 Jakob Hull Havgaard, Rune B. Lyngsø, Gary D. Stormo, Jan Gorodkin. bioinformatics, 21(9):1815-1824, 2005. [doi]

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