Journal: Bioinformatics

Volume 29, Issue 17

2075 -- 2083Julie Nocq, Magalie Celton, Patrick Gendron, Sébastien Lemieux, Brian T. Wilhelm. Harnessing virtual machines to simplify next-generation DNA sequencing analysis
2084 -- 2087Mikita Suyama. dynamin 1
2088 -- 2095Stan Pounds, Cheng Cheng, Shaoyu Li, Zhifa Liu, Jinghui Zhang, Charles Mullighan. A genomic random interval model for statistical analysis of genomic lesion data
2096 -- 2102David Koslicki, Simon Foucart, Gail Rosen. Quikr: a method for rapid reconstruction of bacterial communities via compressive sensing
2103 -- 2111Yuan Zhang, Yanni Sun, James R. Cole. A Sensitive and Accurate protein domain cLassification Tool (SALT) for short reads
2112 -- 2121Francisco M. Ortuño Guzman, Olga Valenzuela, Fernando Rojas, Héctor Pomares, Javier P. Florido, José M. Urquiza, Ignacio Rojas. Optimizing multiple sequence alignments using a genetic algorithm based on three objectives: structural information, non-gaps percentage and totally conserved columns
2122 -- 2128Joanna S. G. Slusky, Roland L. Dunbrack Jr.. Charge asymmetry in the proteins of the outer membrane
2129 -- 2136Seydou Traoré, David Allouche, Isabelle André, Simon de Givry, George Katsirelos, Thomas Schiex, Sophie Barbe. A new framework for computational protein design through cost function network optimization
2137 -- 2145Xiaowei Chen, Frank J. Slack, Hongyu Zhao. Joint analysis of expression profiles from multiple cancers improves the identification of microRNA-gene interactions
2146 -- 2152Andrea Rau, Mélina Gallopin, Gilles Celeux, Florence Jaffrézic. Data-based filtering for replicated high-throughput transcriptome sequencing experiments
2153 -- 2161Ei-Wen Yang, Thomas Girke, Tao Jiang. Differential gene expression analysis using coexpression and RNA-Seq data
2162 -- 2168Yuju Lee, Qing Zhou. Co-regulation in embryonic stem cells via context-dependent binding of transcription factors
2169 -- 2177Wei Liu, Chunquan Li, Yanjun Xu, Haixiu Yang, Qianlan Yao, Junwei Han, Desi Shang, Chunlong Zhang, Fei Su, Xiaoxi Li, Yun Xiao, Fan Zhang, Meng Dai, Xia Li. Topologically inferring risk-active pathways toward precise cancer classification by directed random walk
2178 -- 2185Yang Zhao, Takeyuki Tamura, Tatsuya Akutsu, Jean-Philippe Vert. Flux balance impact degree: a new definition of impact degree to properly treat reversible reactions in metabolic networks
2186 -- 2194Rong Xu, Li Li, QuanQiu Wang. Towards building a disease-phenotype knowledge base: extracting disease-manifestation relationship from literature
2195 -- 2196René Snajder, Zlatko Trajanoski, Hubert Hackl. GPViz: dynamic visualization of genomic regions and variants affecting protein domains
2197 -- 2198Maxim Barenboim, Thomas Manke. ChroMoS: an integrated web tool for SNP classification, prioritization and functional interpretation
2199 -- 2202Dmitri S. Pavlichin, Tsachy Weissman, Golan Yona. The human genome contracts again
2203 -- 2205Martin Triska, David Grocutt, James Southern, Denis J. Murphy, Tatiana Tatarinova. cisExpress: motif detection in DNA sequences
2206 -- 2207Ryo Sakai, Matthieu Moisse, Joke Reumers, Jan Aerts. Pipit: visualizing functional impacts of structural variations
2208 -- 2210Mamunur Rashid, Carla Daniela Robles-Espinoza, Alistair G. Rust, David J. Adams. Cake: a bioinformatics pipeline for the integrated analysis of somatic variants in cancer genomes
2211 -- 2212Renaud Gaujoux, Cathal Seoighe. CellMix: a comprehensive toolbox for gene expression deconvolution
2213 -- 2215John W. May, A. Gordon James, Christoph Steinbeck. Metingear: a development environment for annotating genome-scale metabolic models
2216 -- 2217Sebastian Vlaic, Bianca Hoffmann, Peter Kupfer, Michael Weber, Andreas Dräger. GRN2SBML: automated encoding and annotation of inferred gene regulatory networks complying with SBML
2218 -- 2220Rui Zhong, Min-Soo Kim, Michael A. White, Yang Xie, Guanghua Xiao. SbacHTS: Spatial background noise correction for High-Throughput RNAi Screening
2221 -- 2222Ke Liu, Zhangming Yan, Yuchao Li, Zhirong Sun. Linc2GO: a human LincRNA function annotation resource based on ceRNA hypothesis