| 2669 | -- | 2677 | Aleksey V. Zimin, Guillaume Marçais, Daniela Puiu, Michael Roberts, Steven L. Salzberg, James A. Yorke. The MaSuRCA genome assembler |
| 2678 | -- | 2682 | Liangcai Zhang, Li Zhang. Use of autocorrelation scanning in DNA copy number analysis |
| 2683 | -- | 2689 | Gwo-Liang Chen, Yun-Juan Chang, Chun-Hway Hsueh. ab initio software package for automated genome-wide analysis of DNA repeats for prokaryotes |
| 2690 | -- | 2698 | Jie Ren, Kai Song, Fengzhu Sun, Minghua Deng, Gesine Reinert. Multiple alignment-free sequence comparison |
| 2699 | -- | 2704 | Rafik A. Salama, Dov J. Stekel. A non-independent energy-based multiple sequence alignment improves prediction of transcription factor binding sites |
| 2705 | -- | 2713 | Anaïs F. Bardet, Jonas Steinmann, Sangeeta Bafna, Juergen A. Knoblich, Julia Zeitlinger, Alexander Stark. Identification of transcription factor binding sites from ChIP-seq data at high resolution |
| 2714 | -- | 2721 | Angela D. Wilkins, Eric Venner, David C. Marciano, Serkan Erdin, Benu Atri, Rhonald C. Lua, Olivier Lichtarge. Accounting for epistatic interactions improves the functional analysis of protein structures |
| 2722 | -- | 2728 | Valerio Mariani, Marco Biasini, Alessandro Barbato, Torsten Schwede. lDDT: a local superposition-free score for comparing protein structures and models using distance difference tests |
| 2729 | -- | 2734 | Sébastien Artigaud, Olivier Gauthier, Vianney Pichereau. Identifying differentially expressed proteins in two-dimensional electrophoresis experiments: inputs from transcriptomics statistical tools |
| 2735 | -- | 2743 | Ashok Reddy Dinasarapu, Shakti Gupta, Mano Ram Maurya, Eoin Fahy, Jun Min, Manish Sud, Merril J. Gersten, Christopher K. Glass, Shankar Subramaniam. A combined omics study on activated macrophages - enhanced role of STATs in apoptosis, immunity and lipid metabolism |
| 2744 | -- | 2749 | Qing Duan, Eric Yi Liu, Paul L. Auer, Guosheng Zhang, Ethan M. Lange, Goo Jun, Chris Bizon, Shuo Jiao, Steven Buyske, Nora Franceschini, Chris S. Carlson, Li Hsu, Alex P. Reiner, Ulrike Peters, Jeffrey Haessler, Keith Curtis, Christina L. Wassel, Jennifer G. Robinson, Lisa W. Martin, Christopher A. Haiman, Loic Le Marchand, Tara Cox Matise, Lucia A. Hindorff, Dana C. Crawford, Themistocles L. Assimes, Hyun Min Kang, Gerardo Heiss, Rebecca D. Jackson, Charles Kooperberg, James G. Wilson, Gonçalo R. Abecasis, Kari E. North, Deborah A. Nickerson, Leslie A. Lange, Yun Li. Imputation of coding variants in African Americans: better performance using data from the exome sequencing project |
| 2744 | -- | 2749 | Qing Duan, Eric Yi Liu, Paul L. Auer, Guosheng Zhang, Ethan M. Lange, Goo Jun, Chris Bizon, Shuo Jiao, Steven Buyske, Nora Franceschini, Chris S. Carlson, Li Hsu, Alex P. Reiner, Ulrike Peters, Jeffrey Haessler, Keith Curtis, Christina L. Wassel, Jennifer G. Robinson, Lisa W. Martin, Christopher A. Haiman, Loic Le Marchand, Tara Cox Matise, Lucia A. Hindorff, Dana C. Crawford, Themistocles L. Assimes, Hyun Min Kang, Gerardo Heiss, Rebecca D. Jackson, Charles Kooperberg, James G. Wilson, Gonçalo R. Abecasis, Kari E. North, Deborah A. Nickerson, Leslie A. Lange, Yun Li. Imputation of coding variants in African Americans: better performance using data from the exome sequencing project |
| 2750 | -- | 2756 | James J. Yang, Jia Li, Anne Buu, L. K. Williams. Efficient inference of local ancestry |
| 2757 | -- | 2764 | Evan O. Paull, Daniel E. Carlin, Mario Niepel, Peter K. Sorger, David Haussler, Joshua M. Stuart. Discovering causal pathways linking genomic events to transcriptional states using Tied Diffusion Through Interacting Events (TieDIE) |
| 2765 | -- | 2773 | Leonid Chindelevitch, Cheng-Yu Ma, Chung-Shou Liao, Bonnie Berger. Optimizing a global alignment of protein interaction networks |
| 2774 | -- | 2780 | Tsung-Heng Tsai, Mahlet G. Tadesse, Cristina Di Poto, Lewis K. Pannell, Yehia Mechref, Yue Joseph Wang, Habtom W. Ressom. Multi-profile Bayesian alignment model for LC-MS data analysis with integration of internal standards |
| 2781 | -- | 2787 | João D. Ferreira, Janna Hastings, Francisco M. Couto. Exploiting disjointness axioms to improve semantic similarity measures |
| 2788 | -- | 2789 | Ben Elsworth, Martin O. Jones, Mark L. Blaxter. Badger - an accessible genome exploration environment |
| 2790 | -- | 2791 | Fritz J. Sedlazeck, Philipp Rescheneder, Arndt von Haeseler. NextGenMap: fast and accurate read mapping in highly polymorphic genomes |
| 2792 | -- | 2794 | Yan Wang, Tyler W. H. Backman, Kevin Horan, Thomas Girke. fmcsR: mismatch tolerant maximum common substructure searching in R |
| 2795 | -- | 2796 | Benjamin Lutz, Claude Sinner, Geertje Heuermann, Abhinav Verma, Alexander Schug. eSBMTools 1.0: enhanced native structure-based modeling tools |
| 2797 | -- | 2798 | Greg C. Imholte, Marie-Pier Scott-Boyer, Aurélie Labbe, Christian F. Deschepper, Raphael Gottardo. iBMQ: a R/Bioconductor package for integrated Bayesian modeling of eQTL data |
| 2799 | -- | 2800 | Amit Kumar Yadav, Puneet Kumar Kadimi, Dhirendra Kumar, Debasis Dash. ProteoStats - a library for estimating false discovery rates in proteomics pipelines |
| 2801 | -- | 2803 | Jesse D. Ziebarth, Anindya Bhattacharya, Yan Cui. Bayesian Network Webserver: a comprehensive tool for biological network modeling |
| 2804 | -- | 2805 | Kevin L. Crowell, Gordon W. Slysz, Erin S. Baker, Brian L. LaMarche, Matthew E. Monroe, Yehia M. Ibrahim, Samuel H. Payne, Gordon A. Anderson, Richard D. Smith. LC-IMS-MS Feature Finder: detecting multidimensional liquid chromatography, ion mobility and mass spectrometry features in complex datasets |
| 2806 | -- | 2807 | Christina M. Bergey, Andrew M. Watkins, Paramjit S. Arora. HippDB: a database of readily targeted helical protein-protein interactions |
| 2808 | -- | 2809 | Chuming Chen, Zhiwen Li, Hongzhan Huang, Baris E. Suzek, Cathy H. Wu, UniProt Consortium. A fast Peptide Match service for UniProt Knowledgebase |
| 2810 | -- | 2811 | Cristóbal Fresno, Elmer Andrés Fernández. R interface to DAVID |