| 965 | -- | 972 | Anish Man Singh Shrestha, Martin C. Frith. An approximate Bayesian approach for mapping paired-end DNA reads to a reference genome |
| 973 | -- | 980 | Heiner Klingenberg, Kathrin Petra Aßhauer, Thomas Lingner, Peter Meinicke. Protein signature-based estimation of metagenomic abundances including all domains of life and viruses |
| 981 | -- | 988 | Valentina Indio, Pier Luigi Martelli, Castrense Savojardo, Piero Fariselli, Rita Casadio. The prediction of organelle-targeting peptides in eukaryotic proteins with Grammatical-Restrained Hidden Conditional Random Fields |
| 989 | -- | 995 | Fabian Sievers, David Dineen, Andreas Wilm, Desmond G. Higgins. Making automated multiple alignments of very large numbers of protein sequences |
| 996 | -- | 1003 | Maryam Abbasi, Luís Paquete, Arnaud Liefooghe, Miguel Pinheiro, Pedro Matias. Improvements on bicriteria pairwise sequence alignment: algorithms and applications |
| 1004 | -- | 1010 | Hsueh-Ting Chu, William W. L. Hsiao, Jen-Chih Chen, Tze-Jung Yeh, Mong-Hsun Tsai, Han Lin, Yen-Wenn Liu, Sheng-An Lee, Chaur-Chin Chen, Theresa Tsao, Cheng-Yan Kao. de novo assembly of RNA-Seq with efficient chimera-detection |
| 1011 | -- | 1017 | Salvador Capella-Gutiérrez, Toni Gabaldón. Measuring guide-tree dependency of inferred gaps in progressive aligners |
| 1018 | -- | 1025 | Alvaro J. González, Li Liao, Cathy H. Wu. Prediction of contact matrix for protein-protein interaction |
| 1026 | -- | 1034 | Can Yang, Lin Wang, Shuqin Zhang, Hongyu Zhao. Accounting for non-genetic factors by low-rank representation and sparse regression for eQTL mapping |
| 1035 | -- | 1043 | Ning Leng, John A. Dawson, James A. Thomson, Victor Ruotti, Anna I. Rissman, Bart M. G. Smits, Jill D. Haag, Michael N. Gould, Ron M. Stewart, Christina Kendziorski. EBSeq: an empirical Bayes hierarchical model for inference in RNA-seq experiments |
| 1044 | -- | 1051 | Tri Hieu Nim, Le Luo, Marie-Véronique Clément, Jacob K. White, Lisa Tucker-Kellogg. Systematic parameter estimation in data-rich environments for cell signalling dynamics |
| 1052 | -- | 1059 | Syed Murtuza Baker, C. Hart Poskar, Falk Schreiber, Björn H. Junker. An improved constraint filtering technique for inferring hidden states and parameters of a biological model |
| 1060 | -- | 1067 | Alex Greenfield, Christoph Hafemeister, Richard Bonneau. Robust data-driven incorporation of prior knowledge into the inference of dynamic regulatory networks |
| 1068 | -- | 1071 | Jingjing Jin, Jun Liu, Huan Wang, Limsoon Wong, Nam-Hai Chua. PLncDB: plant long non-coding RNA database |
| 1072 | -- | 1075 | Alexey A. Gurevich, Vladislav Saveliev, Nikolay Vyahhi, Glenn Tesler. QUAST: quality assessment tool for genome assemblies |
| 1076 | -- | 1077 | Sangwoo Kim, Kyowon Jeong, Vineet Bafna. in silico exome capture |
| 1078 | -- | 1080 | Hasup Lee, Hahnbeom Park, Junsu Ko, Chaok Seok. GalaxyGemini: a web server for protein homo-oligomer structure prediction based on similarity |
| 1081 | -- | 1082 | Gwenaël G. R. Leday, Mark A. van de Wiel. PLRS: a flexible tool for the joint analysis of DNA copy number and mRNA expression data |
| 1083 | -- | 1085 | Ting Gong, Joseph D. Szustakowski. DeconRNASeq: a statistical framework for deconvolution of heterogeneous tissue samples based on mRNA-Seq data |
| 1086 | -- | 1088 | Stephen W. Hartley, Paola Sebastiani. PleioGRiP: genetic risk prediction with pleiotropy |
| 1089 | -- | 1091 | Nils Gehlenborg, Michael S. Noble, Gad Getz, Lynda Chin, Peter J. Park. Nozzle: a report generation toolkit for data analysis pipelines |
| 1092 | -- | 1094 | Dong-Sheng Cao, Qing-Song Xu, Qian-Nan Hu, Yi-Zeng Liang. ChemoPy: freely available python package for computational biology and chemoinformatics |
| 1095 | -- | 1097 | Júlio Trevisan, Plamen P. Angelov, Andrew D. Scott, Paul L. Carmichael, Francis L. Martin. IRootLab: a free and open-source MATLAB toolbox for vibrational biospectroscopy data analysis |
| 1098 | -- | 1100 | Daniel Lobo, Taylor J. Malone, Michael Levin. Planform: an application and database of graph-encoded planarian regenerative experiments |
| 1101 | -- | 1102 | Bo Peng, Huann-Sheng Chen, Leah E. Mechanic, Ben Racine, John Clarke, Lauren Clarke, Elizabeth Gillanders, Eric J. Feuer. Genetic Simulation Resources: a website for the registration and discovery of genetic data simulators |
| 1103 | -- | 1104 | John Gómez, Leyla J. Garcia, Gustavo A. Salazar, Jose M. Villaveces, Swanand P. Gore, Alexander García Castro, Maria Jesus Martin, Guillaume Launay, Rafael Alcántara, Noemi del-Toro, Marine Dumousseau, Sandra E. Orchard, Sameer Velankar, Henning Hermjakob, Chenggong Zong, Peipei Ping, Manuel Corpas, Rafael C. Jimenez. BioJS: an open source JavaScript framework for biological data visualization |