Desmond G. Higgins - researchr alias

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Viewing Publication 1 - 41 from 41

2020

QuanTest2: benchmarking multiple sequence alignments using secondary structure predictionFabian Sievers, Desmond G. Higgins. bioinformatics, 36(1):90-95, 2020. [doi]

2017

Protein multiple sequence alignment benchmarking through secondary structure predictionQuan Le, Fabian Sievers, Desmond G. Higgins. bioinformatics, 33(9):1331-1337, 2017. [doi]

2016

de novo protein structure predictions to measure the quality of very large multiple sequence alignmentsGearoid Fox, Fabian Sievers, Desmond G. Higgins. bioinformatics, 32(6):814-820, 2016. [doi]

ProViz - a web-based visualization tool to investigate the functional and evolutionary features of protein sequencesPeter Jehl, Jean Manguy, Denis C. Shields, Desmond G. Higgins, Norman E. Davey. nar, 44(Webserver-Issue), 2016. [doi]

2015

Instability in progressive multiple sequence alignment algorithmsKieran Boyce, Fabian Sievers, Desmond G. Higgins. almob, 10:26, 2015. [doi]

OD-seq: outlier detection in multiple sequence alignmentsPeter Jehl, Fabian Sievers, Desmond G. Higgins. bmcbi, 16:269, 2015. [doi]

2014

GWIPS-viz: development of a ribo-seq genome browserAudrey M. Michel, Gearoid Fox, Anmol M. Kiran, Christof De Bo, Patrick B. F. O'Connor, Stephen M. Heaphy, James P. A. Mullan, Claire A. Donohue, Desmond G. Higgins, Pavel V. Baranov. nar, 42(Database-Issue):859-864, 2014. [doi]

Systematic exploration of guide-tree topology effects for small protein alignmentsFabian Sievers, Graham M. Hughes, Desmond G. Higgins. bmcbi, 15:338, 2014. [doi]

2013

Making automated multiple alignments of very large numbers of protein sequencesFabian Sievers, David Dineen, Andreas Wilm, Desmond G. Higgins. bioinformatics, 29(8):989-995, 2013. [doi]

2010

Sequence embedding for fast construction of guide trees for multiple sequence alignmentGordon Blackshields, Fabian Sievers, Weifeng Shi, Andreas Wilm, Desmond G. Higgins. almob, 5:21, 2010. [doi]

Detecting microRNA activity from gene expression dataStephen F. Madden, Susan B. Carpenter, Ian B. Jeffery, Harry Björkbacka, Katherine A. Fitzgerald, Luke A. O Neill, Desmond G. Higgins. bmcbi, 11:257, 2010. [doi]

2008

2007

Integrating transcription factor binding site information with gene expression datasetsIan B. Jeffery, Stephen F. Madden, Paul A. McGettigan, Guy Perrière, Aedín C. Culhane, Desmond G. Higgins. bioinformatics, 23(3):298-305, 2007. [doi]

Clustal W and Clustal X version 2.0M. A. Larkin, Gordon Blackshields, N. P. Brown, R. Chenna, Paul A. McGettigan, Hamish McWilliam, Franck Valentin, Iain M. Wallace, Andreas Wilm, Rodrigo Lopez, Julie Dawn Thompson, Toby J. Gibson, Desmond G. Higgins. bioinformatics, 23(21):2947-2948, 2007. [doi]

The M-Coffee web server: a meta-method for computing multiple sequence alignments by combining alternative alignment methodsSébastien Moretti, Fabrice Armougom, Iain M. Wallace, Desmond G. Higgins, C. Victor Jongeneel, Cédric Notredame. nar, 35(Web-Server-Issue):645-648, 2007. [doi]

Supervised multivariate analysis of sequence groups to identify specificity determining residuesIain M. Wallace, Desmond G. Higgins. bmcbi, 8, 2007. [doi]

2006

2005

MADE4: an R package for multivariate analysis of gene expression dataAedín C. Culhane, Jean Thioulouse, Guy Perrière, Desmond G. Higgins. bioinformatics, 21(11):2789-2790, 2005. [doi]

Evaluation of iterative alignment algorithms for multiple alignmentIain M. Wallace, Orla O Sullivan, Desmond G. Higgins. bioinformatics, 21(8):1408-1414, 2005. [doi]

2003

2002

Between-group analysis of microarray dataAedín C. Culhane, Guy Perrière, Elizabeth C. Considine, Thomas G. Cotter, Desmond G. Higgins. bioinformatics, 18(12):1600-1608, 2002.

1999

MIAH: automatic alignment of eukaryotic SSU rRNAsP. Thebault, P. Monestie, A. McGrath, Desmond G. Higgins. bioinformatics, 15(4):341-342, 1999.

1998

Empirical estimation of the reliability of ribosomal RNA alignmentsEmmet A. O Brien, Desmond G. Higgins. bioinformatics, 14(10):830-838, 1998.

Optimization of ribosomal RNA profile alignmentsEmmet A. O Brien, Cédric Notredame, Desmond G. Higgins. bioinformatics, 14(4):332-341, 1998.

COFFEE: an objective function for multiple sequence alignmentsCédric Notredame, Liisa Holm, Desmond G. Higgins. bioinformatics, 14(5):407-422, 1998.

1994

Improved sensitivity of profile searches through the use of sequence weights and gap excisionJulie Dawn Thompson, Desmond G. Higgins, Toby J. Gibson. bioinformatics, 10(1):19-29, 1994.

1993

The EMBL data libraryCatherine M. Rice, Rainer Fuchs, Desmond G. Higgins, Peter Stoehr, Graham Cameron. nar, 21(13):2967-2971, 1993.

1992

OBSTRUCT: a program to obtain largest cliques from a protein sequence set according to structural resolution and sequence similarityJ. Heringa, H. Sommerfeldt, Desmond G. Higgins, P. Argos. bioinformatics, 8(6):599-600, 1992.

EMBLSCAN: fast approximate DNA database searches on compact discDesmond G. Higgins, Peter Stoehr. bioinformatics, 8(2):137-139, 1992.

CLUSTAL V: improved software for multiple sequence alignmentDesmond G. Higgins, Alan J. Bleasby, Rainer Fuchs. bioinformatics, 8(2):189-191, 1992.

Sequence ordinations: a multivariate analysis approach to analysing large sequence data setsDesmond G. Higgins. bioinformatics, 8(1):15-22, 1992.

GCWIND: a microcomputer program for identifying open reading frames according to codon positional G+C contentDenis C. Shields, Desmond G. Higgins, P. M. Sharp. bioinformatics, 8(5):521-523, 1992.

1989

Fast and sensitive multiple sequence alignments on a microcomputerDesmond G. Higgins, P. M. Sharp. bioinformatics, 5(2):151-153, 1989.

1987

Interfacing similarity search software with the sequence retrieval system ACNUCDesmond G. Higgins, Manolo Gouy. bioinformatics, 3(3):239-241, 1987.

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Publications by 'Desmond G. Higgins'

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