Pavel V. Baranov - researchr alias

researchr

You are not signed in
Sign in
Sign up

Viewing Publication 1 - 17 from 17

2021

Trips-Viz: an environment for the analysis of public and user-generated ribosome profiling dataStephen J. Kiniry, Ciara E. Judge, Audrey M. Michel, Pavel V. Baranov. nar, 49(Webserver-Issue):662-670, 2021. [doi]

2019

Trips-Viz: a transcriptome browser for exploring Ribo-Seq dataStephen J. Kiniry, Patrick B. F. O'Connor, Audrey M. Michel, Pavel V. Baranov. nar, 47(Database-Issue), 2019. [doi]

2018

Improving data workflow systems with cloud services and use of open data for bioinformatics researchMd. Rezaul Karim, Audrey M. Michel, Achille Zappa, Pavel V. Baranov, Ratnesh Sahay, Dietrich Rebholz-Schuhmann. bib, 19(5):1035-1050, 2018. [doi]

GWIPS-viz: 2018 updateAudrey M. Michel, Stephen J. Kiniry, Patrick B. F. O'Connor, James P. A. Mullan, Pavel V. Baranov. nar, 46(Database-Issue), 2018. [doi]

2014

Computational approach for calculating the probability of eukaryotic translation initiation from ribo-seq data that takes into account leaky scanningAudrey M. Michel, Dmitry E. Andreev, Pavel V. Baranov. bmcbi, 15:380, 2014. [doi]

GWIPS-viz: development of a ribo-seq genome browserAudrey M. Michel, Gearoid Fox, Anmol M. Kiran, Christof De Bo, Patrick B. F. O'Connor, Stephen M. Heaphy, James P. A. Mullan, Claire A. Donohue, Desmond G. Higgins, Pavel V. Baranov. nar, 42(Database-Issue):859-864, 2014. [doi]

2013

Darned in 2013: inclusion of model organisms and linking with WikipediaAnmol Kiran, John J. O'Mahony, Komal Sanjeev, Pavel V. Baranov. nar, 41(Database-Issue):258-261, 2013. [doi]

rRNA: mRNA pairing alters the length and the symmetry of mRNA-protected fragments in ribosome profiling experimentsPatrick B. F. O'Connor, Gene-Wei Li, Jonathan S. Weissman, John F. Atkins, Pavel V. Baranov. bioinformatics, 29(12):1488-1491, 2013. [doi]

2012

CodonLogo: a sequence logo-based viewer for codon patternsVirag Sharma, David P. Murphy, Gregory Provan, Pavel V. Baranov. bioinformatics, 28(14):1935-1936, 2012. [doi]

2010

Recode-2: new design, new search tools, and many more genesMichaël Bekaert, Andrew E. Firth, Yan Zhang, Vadim N. Gladyshev, John F. Atkins, Pavel V. Baranov. nar, 38(Database-Issue):69-74, 2010. [doi]

DARNED: a DAtabase of RNa EDiting in humansAnmol Kiran, Pavel V. Baranov. bioinformatics, 26(14):1772-1776, 2010. [doi]

2008

Ornithine decarboxylase antizyme finder (OAF): Fast and reliable detection of antizymes with frameshifts in mRNAsMichaël Bekaert, Ivaylo P. Ivanov, John F. Atkins, Pavel V. Baranov. bmcbi, 9, 2008. [doi]

2006

ARFA: a program for annotating bacterial release factor genes, including prediction of programmed ribosomal frameshiftingMichaël Bekaert, John F. Atkins, Pavel V. Baranov. bioinformatics, 22(20):2463-2465, 2006. [doi]

2003

RECODE 2003Pavel V. Baranov, Olga L. Gurvich, Andrew W. Hammer, Raymond F. Gesteland, John F. Atkins. nar, 31(1):87-89, 2003.

2001

RECODE: a database of frameshifting, bypassing and codon redefinition utilized for gene expressionPavel V. Baranov, Olga L. Gurvich, Olivier Fayet, Marie Françoise Prère, W. Allen Miller, Raymond F. Gesteland, John F. Atkins, Michael C. Giddings. nar, 29(1):264-267, 2001.

1999

The Database of Ribosomal Cross-links: an updatePavel V. Baranov, Andrew V. Kubarenko, Olga L. Gurvich, Tatyana A. Shamolina, Richard Brimacombe. nar, 27(1):184-185, 1999.

1998

The Database of Ribosomal Cross links (DRC)Pavel V. Baranov, Petr V. Sergiev, Olga A. Dontsova, Alexey A. Bogdanov, Richard Brimacombe. nar, 26(1):187-189, 1998.

Sign in or sign up to see more results.

runs on WebDSL