Julie Dawn Thompson - researchr alias

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Viewing Publication 1 - 26 from 26

2023

De-MISTED: Image-based classification of erroneous multiple sequence alignments using convolutional neural networksHiba Khodji, Pierre Collet, Julie Dawn Thompson, Anne Jeannin-Girardon. apin, 53(15):18806-18820, August 2023. [doi]

Real or fake? Measuring the impact of protein annotation errors on estimates of domain gain and loss eventsArnaud Kress, Olivier Poch, Odile Lecompte, Julie Dawn Thompson. fbinf, 3, May 2023. [doi]

2022

Apprentissage automatique basé sur l'agrégation pour la prédiction de liens dans les réseaux d'interactions protéine-protéineHajer Akid, Kirsley Chennen, Gabriel Frey, Julie Dawn Thompson, Mounir Ben Ayed, Nicolas Lachiche. f-egc 2022: 481-482 [doi]

MERLIN: Identifying Inaccuracies in Multiple Sequence Alignments Using Object DetectionHiba Khodji, Lucille Herbay, Pierre Collet, Julie Dawn Thompson, Anne Jeannin-Girardon. ifip12 2022: 192-203 [doi]

2021

2020

Optimality of circular codes versus the genetic code after frameshift errorsGopal Dila, Christian J. Michel, Julie Dawn Thompson. biosystems, 195:104134, 2020. [doi]

Understanding the causes of errors in eukaryotic protein-coding gene prediction: a case study of primate proteomesCorentin Meyer, Nicolas Scalzitti, Anne Jeannin-Girardon, Pierre Collet, Olivier Poch, Julie Dawn Thompson. bmcbi, 21(1):513, 2020. [doi]

2015

OrthoInspector 2.0: Software and database updatesBenjamin Linard, Alexis Allot, Raphael Schneider, Can Morel, Raymond Ripp, Marc Bigler, Julie Dawn Thompson, Olivier Poch, Odile Lecompte. bioinformatics, 31(3):447-448, 2015. [doi]

2013

Classification multi-étiquettes pour l'alignement multiple de séquences protéiquesLina Fahed, Gabriel Frey, Julie Dawn Thompson, Nicolas Lachiche. f-egc 2013: 431-436

2009

Knowledge-based expert systems and a proof-of-concept case study for multiple sequence alignment construction and analysisMohamed Radhouene Aniba, Sophie Siguenza, Anne Friedrich, Frédéric Plewniak, Olivier Poch, Aron Marchler-Bauer, Julie Dawn Thompson. bib, 10(1):11-23, 2009. [doi]

2008

A new protein linear motif benchmark for multiple sequence alignment softwareEmmanuel Perrodou, Claudia Chica, Olivier Poch, Toby J. Gibson, Julie Dawn Thompson. bmcbi, 9, 2008. [doi]

2007

Clustal W and Clustal X version 2.0M. A. Larkin, Gordon Blackshields, N. P. Brown, R. Chenna, Paul A. McGettigan, Hamish McWilliam, Franck Valentin, Iain M. Wallace, Andreas Wilm, Rodrigo Lopez, Julie Dawn Thompson, Toby J. Gibson, Desmond G. Higgins. bioinformatics, 23(21):2947-2948, 2007. [doi]

2006

MAGOS: multiple alignment and modelling serverNicolas Garnier, Anne Friedrich, Raphael Bolze, Emmanuel Bettler, Luc Moulinier, Christophe Geourjon, Julie Dawn Thompson, Gilbert Deléage, Olivier Poch. bioinformatics, 22(17):2164-2165, 2006. [doi]

2005

Valid: Validation of Protein Sequence Quality Based on Multiple Alignment DataLaurent Bianchetti, Julie Dawn Thompson, Odile Lecompte, Frédéric Plewniak, Olivier Poch. jbcb, 3(4):929-948, 2005. [doi]

GOAnno: GO annotation based on multiple alignmentFrédéric Chalmel, Aurélie Lardenois, Julie Dawn Thompson, Jean Muller, José-Alain Sahel, Thierry Léveillard, Olivier Poch. bioinformatics, 21(9):2095-2096, 2005. [doi]

2003

2001

BAliBASE (Benchmark Alignment dataBASE): enhancements for repeats, transmembrane sequences and circular permutationsAnne Bahr, Julie Dawn Thompson, Jean-Claude Thierry, Olivier Poch. nar, 29(1):323-326, 2001.

2000

Ballast: Blast post-processing based on locally conserved segmentsFrédéric Plewniak, Julie Dawn Thompson, Olivier Poch. bioinformatics, 16(9):750-759, 2000.

1999

BAliBASE: a benchmark alignment database for the evaluation of multiple alignment programsJulie Dawn Thompson, Frédéric Plewniak, Olivier Poch. bioinformatics, 15(1):87-88, 1999.

A comprehensive comparison of multiple sequence alignment programsJulie Dawn Thompson, Frédéric Plewniak, Olivier Poch. nar, 27(13):2682-2690, 1999.

1995

Introducing variable gap penalties to sequence alignment in linear spaceJulie Dawn Thompson. bioinformatics, 11(2):181-186, 1995.

1994

Detection of dsRNA-binding domains in RNA helicase A and Drosophila maleless: implications for monomeric RNA helicasesToby J. Gibson, Julie Dawn Thompson. nar, 22(13):2552-2556, 1994.

Improved sensitivity of profile searches through the use of sequence weights and gap excisionJulie Dawn Thompson, Desmond G. Higgins, Toby J. Gibson. bioinformatics, 10(1):19-29, 1994.

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Publications by 'Julie Dawn Thompson'

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