Abstract is missing.
- ISMB 2003 - EditorialGene Myers. 1-2
- ISMB 2003 Organization3-6
- Bayesian gene/species tree reconciliation and orthology analysis using MCMCLars Arvestad, Ann-Charlotte Berglund, Jens Lagergren, Bengt Sennblad. 7-15 [doi]
- Methods for optimizing antiviral combination therapiesNiko Beerenwinkel, Thomas Lengauer, Martin Däumer, Rolf Kaiser, Hauke Walter, Klaus Korn, Daniel Hoffmann, Joachim Selbig. 16-25 [doi]
- Remote homology detection: a motif based approachAsa Ben-Hur, Douglas L. Brutlag. 26-33 [doi]
- Predicting bacterial transcription units using sequence and expression dataJoseph Bockhorst, Yu Qiu, Jeremy D. Glasner, Mingzhu Liu, Frederick R. Blattner, Mark Craven. 34-43 [doi]
- SNP and mutation discovery using base-specific cleavage and MALDI-TOF mass spectrometrySebastian Böcker. 44-53 [doi]
- Glocal alignment: finding rearrangements during alignmentMichael Brudno, Sanket Malde, Alexander Poliakov, Chuong B. Do, Olivier Couronne, Inna Dubchak, Serafim Batzoglou. 54-62 [doi]
- Linking genotype to phenotype: the International Rice Information System (IRIS)Richard M. Bruskiewich, Alexander B. Cosico, William Eusebio, Arllet M. Portugal, Luralyn M. Ramos, Ma. Teresa Reyes, May Ann B. Sallan, Victor Jun M. Ulat, Xusheng Wang, Kenneth L. McNally, Ruaraidh Sackville Hamilton, Christopher Graham McLaren. 63-65 [doi]
- Stochastic modeling of RNA pseudoknotted structures: a grammatical approachLiming Cai, Russell L. Malmberg, Yunzhou Wu. 66-73 [doi]
- Fast identification and statistical evaluation of segmental homologies in comparative mapsPeter P. Calabrese, Sugata Chakravarty, Todd J. Vision. 74-80 [doi]
- PSI: indexing protein structures for fast similarity searchOrhan Çamoglu, Tamer Kahveci, Ambuj K. Singh. 81-83 [doi]
- Combining multiple microarray studies and modeling interstudy variationJung Kyoon Choi, Ungsik Yu, Sangsoo Kim, Ook Joon Yoo. 84-90 [doi]
- Combining NLP and probabilistic categorisation for document and term selection for Swiss-Prot medical annotationPavel B. Dobrokhotov, Cyril Goutte, Anne-Lise Veuthey, Éric Gaussier. 91-94 [doi]
- MASS: multiple structural alignment by secondary structuresOranit Dror, Hadar Benyamini, Ruth Nussinov, Haim J. Wolfson. 95-104 [doi]
- Annotation of bacterial genomes using improved phylogenomic profilesFrançois Enault, Karsten Suhre, Chantal Abergel, Olivier Poirot, Jean-Michel Claverie. 105-107 [doi]
- Chain functions and scoring functions in genetic networksIrit Gat-Viks, Ron Shamir. 108-117 [doi]
- Widespread predicted nonsense-mediated mRNA decay of alternatively-spliced transcripts of human normal and disease genesRichard E. Green, Benjamin P. Lewis, R. Tyler Hillman, Marco Blanchette, Liana F. Lareau, Aaron T. Garnett, Donald C. Rio, Steven E. Brenner. 118-121 [doi]
- Detecting protein sequence conservation via metric embeddingsEran Halperin, Jeremy Buhler, Richard M. Karp, Robert Krauthgamer, Ben Westover. 122-129 [doi]
- Sensitive pattern discovery with fuzzy alignments of distantly related proteinsAndreas Heger, Liisa Holm. 130-137 [doi]
- Deriving phylogenetic trees from the similarity analysis of metabolic pathwaysMaureen Heymans, Ambuj K. Singh. 138-146 [doi]
- Using guide trees to construct multiple-sequence evolutionary HMMsI. Holmes. 147-157 [doi]
- Protein structure prediction via combinatorial assembly of sub-structural unitsYuval Inbar, Hadar Benyamini, Ruth Nussinov, Haim J. Wolfson. 158-168 [doi]
- Identification of functional clusters of transcription factor binding motifs in genome sequences: the MSCAN algorithmÖjvind Johansson, Wynand Alkema, Wyeth W. Wasserman, Jens Lagergren. 169-176 [doi]
- Complexity management in visualizing protein interaction networksByong-Hyon Ju, Kyungsook Han. 177-179 [doi]
- GENIA corpus - a semantically annotated corpus for bio-textminingJin-Dong Kim, Tomoko Ohta, Yuka Tateisi, Jun-ichi Tsujii. 180-182 [doi]
- Predicting phenotype from patterns of annotationOliver D. King, Jeffrey C. Lee, Aimee M. Dudley, Daniel M. Janse, George M. Church, Frederick P. Roth. 183-189 [doi]
- Detection and validation of single gene inversionsJean-François Lefebvre, Nadia El-Mabrouk, Elisabeth R. M. Tillier, David Sankoff. 190-196 [doi]
- Predicting protein function from protein/protein interaction data: a probabilistic approachStanley Letovsky, Simon Kasif. 197-204 [doi]
- An ENSEMBLE machine learning approach for the prediction of all-alpha membrane proteinsPier Luigi Martelli, Piero Fariselli, Rita Casadio. 205-211 [doi]
- Talisman - rapid application development for the gridThomas M. Oinn. 212-214 [doi]
- APDB: a novel measure for benchmarking sequence alignment methods without reference alignmentsOrla O Sullivan, Mark Zehnder, Desmond G. Higgins, Philipp Bucher, Aurelien Grosdidier, Cédric Notredame. 215-221 [doi]
- GeneLoc: exon-based integration of human genome mapsNaomi Rosen, Vered Chalifa-Caspi, Orit Shmueli, Avital Adato, Michal Lapidot, Julie Stampnitzky, Marilyn Safran, Doron Lancet. 222-224 [doi]
- The discovery net system for high throughput bioinformaticsAnthony Rowe, Dimitrios Kalaitzopoulos, Michelle Osmond, Moustafa Ghanem, Yike Guo. 225-231 [doi]
- Pair hidden Markov models on tree structuresYasubumi Sakakibara. 232-240 [doi]
- Processing of natural language queries to a relational databaseMaria Samsonova, Andrei Pisarev, Maxim Blagov. 241-249 [doi]
- A tool to assist the study of specific features at protein binding sitesVictor Santander, Miguel Angel Portales, Francisco Melo. 250-251 [doi]
- STRUCLA: a WWW meta-server for protein structure comparison and evolutionary classificationJoanna M. Sasin, Michal A. Kurowski, Janusz M. Bujnicki. 252-254 [doi]
- Using hidden Markov models to analyze gene expression time course dataAlexander Schliep, Alexander Schönhuth, Christine Steinhoff. 255-263 [doi]
- Discovering molecular pathways from protein interaction and gene expression dataEran Segal, Haidong Wang, Daphne Koller. 264-272 [doi]
- Genome-wide discovery of transcriptional modules from DNA sequence and gene expressionEran Segal, R. Yelensky, Daphne Koller. 273-282 [doi]
- CREME: a framework for identifying cis-regulatory modules in human-mouse conserved segmentsRoded Sharan, Ivan Ovcharenko, Asa Ben-Hur, Richard M. Karp. 283-291 [doi]
- A probabilistic method to detect regulatory modulesSaurabh Sinha, Erik van Nimwegen, Eric D. Siggia. 292-301 [doi]
- myGrid: personalised bioinformatics on the information gridRobert D. Stevens, Alan J. Robinson, Carole A. Goble. 302-304 [doi]
- Scaling up accurate phylogenetic reconstruction from gene-order dataJijun Tang, Bernard M. E. Moret. 305-312 [doi]
- Skew in CG content near the transcription start site in Arabidopsis thalianaTatiana Tatarinova, Vyacheslav Brover, Maxim Troukhan, Nickolai Alexandrov. 313-314 [doi]
- Gene structure-based splice variant deconvolution using a microarry platformHui Wang, Earl Hubbell, Jing-Shan Hu, Gangwu Mei, Melissa S. Cline, Gang Lu, Tyson Clark, Michael A. Siani-Rose, Manuel Ares, David Kulp, David Haussler. 315-322 [doi]
- Extraction of correlated gene clusters from multiple genomic data by generalized kernel canonical correlation analysisYoshihiro Yamanishi, Jean-Philippe Vert, A. Nakaya, Minoru Kanehisa. 323-330 [doi]
- Evaluation of text data mining for database curation: lessons learned from the KDD Challenge CupAlexander S. Yeh, Lynette Hirschman, Alexander A. Morgan. 331-339 [doi]
- Extracting synonymous gene and protein terms from biological literatureHong Yu, Eugene Agichtein. 340-349 [doi]