| 2543 | -- | 2550 | Huy Hoang Do, Wing-Kin Sung. CWig: compressed representation of Wiggle/BedGraph format |
| 2551 | -- | 2558 | Israel T. Silva, Rafael Rosales, Adriano J. Holanda, Michel C. Nussenzweig, Mila Jankovic. Identification of chromosomal translocation hotspots via scan statistics |
| 2559 | -- | 2567 | Edward Wijaya, Kana Shimizu, Kiyoshi Asai, Michiaki Hamada. Reference-free prediction of rearrangement breakpoint reads |
| 2568 | -- | 2575 | Yan-Xiao Zhang, Yu-Hsuan Lin, Timothy D. Johnson, Laura S. Rozek, Maureen A. Sartor. PePr: a peak-calling prioritization pipeline to identify consistent or differential peaks from replicated ChIP-Seq data |
| 2576 | -- | 2583 | Zhenhua Yu, Yuanning Liu, Yi Shen, Minghui Wang, Ao Li. CLImAT: accurate detection of copy number alteration and loss of heterozygosity in impure and aneuploid tumor samples using whole-genome sequencing data |
| 2584 | -- | 2591 | Martin Mann, Marcel Kucharík, Christoph Flamm, Michael T. Wolfinger. Memory-efficient RNA energy landscape exploration |
| 2592 | -- | 2597 | Christophe N. Magnan, Pierre Baldi. SSpro/ACCpro 5: almost perfect prediction of protein secondary structure and relative solvent accessibility using profiles, machine learning and structural similarity |
| 2598 | -- | 2602 | María José Nueda, Sonia Tarazona, Ana Conesa. Next maSigPro: updating maSigPro bioconductor package for RNA-seq time series |
| 2603 | -- | 2610 | Andrew Quinn, Punita Juneja, Francis M. Jiggins. Drosophila with a single genome sequence and RNA-seq data |
| 2611 | -- | 2618 | Meng Wang, Shili Lin. FamLBL: detecting rare haplotype disease association based on common SNPs using case-parent triads |
| 2619 | -- | 2626 | Boon-Siew Seah, Sourav S. Bhowmick, C. Forbes Dewey Jr.. DualAligner: a dual alignment-based strategy to align protein interaction networks |
| 2627 | -- | 2635 | Yue Li, Cheng Liang, Ka Chun Wong, Jiawei Luo, Zhaolei Zhang. Mirsynergy: detecting synergistic miRNA regulatory modules by overlapping neighbourhood expansion |
| 2636 | -- | 2643 | Christopher J. Conley, Robert Smith, Ralf J. O. Torgrip, Ryan M. Taylor, Ralf Tautenhahn, John T. Prince. Massifquant: open-source Kalman filter-based XC-MS isotope trace feature detection |
| 2644 | -- | 2651 | Sotiris Dimopoulos, Christian E. Mayer, Fabian Rudolf, Jörg Stelling. Accurate cell segmentation in microscopy images using membrane patterns |
| 2652 | -- | 2653 | Marek S. Wiewiórka, Antonio Messina, Alicja Pacholewska, Sergio Maffioletti, Piotr Gawrysiak, Michal J. Okoniewski. SparkSeq: fast, scalable and cloud-ready tool for the interactive genomic data analysis with nucleotide precision |
| 2654 | -- | 2655 | Alexander Poliakov, Justin Foong, Michael Brudno, Inna Dubchak. GenomeVISTA - an integrated software package for whole-genome alignment and visualization |
| 2656 | -- | 2658 | Matthias Zytnicki, Eduard Akhunov, Hadi Quesneville. de novo assembler |
| 2659 | -- | 2661 | Erika Sallet, Jérôme Gouzy, Thomas Schiex. EuGene-PP: a next-generation automated annotation pipeline for prokaryotic genomes |
| 2662 | -- | 2664 | Marco Falda, Paolo Fontana, Luisa Barzon, Stefano Toppo, Enrico Lavezzo. keeSeek: searching distant non-existing words in genomes for PCR-based applications |
| 2665 | -- | 2667 | Peng Jiang, Susanne Meyer, Zhonggang Hou, Nicholas E. Propson, H. Tom Soh, James A. Thomson, Ron M. Stewart. MPBind: a Meta-motif-based statistical framework and pipeline to Predict Binding potential of SELEX-derived aptamers |
| 2668 | -- | 2669 | Kousik Kundu, Martin Mann, Fabrizio Costa, Rolf Backofen. MoDPepInt: an interactive web server for prediction of modular domain-peptide interactions |
| 2670 | -- | 2672 | Evan A. Boyle, Brian J. O'Roak, Beth K. Martin, Akash Kumar, Jay Shendure. MIPgen: optimized modeling and design of molecular inversion probes for targeted resequencing |
| 2673 | -- | 2675 | Aidan O'Brien, Timothy L. Bailey. GT-Scan: identifying unique genomic targets |
| 2676 | -- | 2677 | Niko Popitsch. CODOC: efficient access, analysis and compression of depth of coverage signals |
| 2678 | -- | 2680 | Chen Wang, Jared Evans, Aditya Bhagwate, Naresh Prodduturi, Vivekananda Sarangi, Mridu Middha, Hugues Sicotte, Peter T. Vedell, Steven N. Hart, Gavin R. Oliver, Jean-Pierre Kocher, Matthew J. Maurer, Anne J. Novak, Susan L. Slager, James R. Cerhan, Yan W. Asmann. PatternCNV: a versatile tool for detecting copy number changes from exome sequencing data |
| 2681 | -- | 2683 | Ahmet Bakan, Anindita Dutta, Wenzhi Mao, Ying Liu, Chakra Chennubhotla, Timothy R. Lezon, Ivet Bahar. ProDy for bridging protein sequence evolution and structural dynamics |
| 2684 | -- | 2685 | Barbora Kozlíková, Eva Sebestova, Vilém Sustr, Jan Brezovsky, Ondrej Strnad, Lukas Daniel, David Bednar, Antonin Pavelka, Martin Manak, Martin Bezdeka, Petr Benes, Matus Kotry, Artur Góra, Jirí Damborský, Jiri Sochor. CAVER Analyst 1.0: graphic tool for interactive visualization and analysis of tunnels and channels in protein structures |
| 2686 | -- | 2688 | John M. Hickey, Gregor Gorjanc, Sarah Hearne, Bevan Emma Huang. AlphaMPSim: flexible simulation of multi-parent crosses |
| 2689 | -- | 2690 | Dimitri Guala, Erik Sjölund, Erik L. L. Sonnhammer. MaxLink: network-based prioritization of genes tightly linked to a disease seed set |
| 2691 | -- | 2692 | Stephen Taylor, Roger Noble. HTML5 PivotViewer: high-throughput visualization and querying of image data on the web |