Journal: Bioinformatics

Volume 30, Issue 2

151 -- 156Laurence O. W. Wilson, Andrew Spriggs, Jennifer M. Taylor, Aude M. Fahrer. A novel splicing outcome reveals more than 2000 new mammalian protein isoforms
157 -- 164Dandi Qiao, Michael H. Cho, Heide Fier, Per S. Bakke, Amund Gulsvik, Edwin K. Silverman, Christoph Lange. On the simultaneous association analysis of large genomic regions: a massive multi-locus association test
165 -- 171Sebastian M. Waszak, Helena Kilpinen, Andreas R. Gschwind, Andrea Orioli, Sunil K. Raghav, Robert M. Witwicki, Eugenia Migliavacca, Alisa Yurovsky, Tuuli Lappalainen, Nouria Hernandez, Alexandre Reymond, Emmanouil T. Dermitzakis, Bart Deplancke. Identification and removal of low-complexity sites in allele-specific analysis of ChIP-seq data
172 -- 179Longjie Cheng, Yu Zhu. A classification approach for DNA methylation profiling with bisulfite next-generation sequencing data
180 -- 188Ernest Turro, William J. Astle, Simon Tavaré. Flexible analysis of RNA-seq data using mixed effects models
189 -- 196Kevin Lim, Limsoon Wong. Finding consistent disease subnetworks using PFSNet
197 -- 205Yaqing Si, Peng Liu, Pinghua Li, Thomas P. Brutnell. Model-based clustering for RNA-seq data
206 -- 213Buhm Han, Eun Yong Kang, Soumya Raychaudhuri, Paul I. W. de Bakker, Eleazar Eskin. Fast pairwise IBD association testing in genome-wide association studies
214 -- 220Simina M. Boca, Rashmi Sinha, Amanda J. Cross, Steven C. Moore, Joshua N. Sampson. Testing multiple biological mediators simultaneously
221 -- 227Mikael Sunnåker, Elías Zamora-Sillero, Adrián López García de Lomana, Florian Rudroff, Uwe Sauer, Jörg Stelling, Andreas Wagner. Topological augmentation to infer hidden processes in biological systems
228 -- 233Marianna De Santis, Francesco Rinaldi, Emmanuela Falcone, Stefano Lucidi, Giulia Piaggio, Aymone Gurtner, Lorenzo Farina. Combining optimization and machine learning techniques for genome-wide prediction of human cell cycle-regulated genes
234 -- 241Attila Kertész-Farkas, Beáta Reiz, Roberto Vera, Michael P. Myers, Sándor Pongor. PTMTreeSearch: a novel two-stage tree-search algorithm with pruning rules for the identification of post-translational modification of proteins in MS/MS spectra
242 -- 250Mohammad Shahrokh Esfahani, Edward R. Dougherty. Effect of separate sampling on classification accuracy
251 -- 257Mandy L. Wilson, Sakiko Okumoto, Laura Adam, Jean Peccoud. Chlamydomonas reinhardtii expression vectors
258 -- 265Álvaro Sebastián, Bruno Contreras-Moreira. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces
266 -- 273Lei Yuan, Cheng Pan, Shuiwang Ji, Michael McCutchan, Zhi-Hua Zhou, Stuart J. Newfeld, Sudhir Kumar, Jieping Ye. Drosophila embryos in images containing spatial patterns of expression
274 -- 281Nicolas Terrapon, January Weiner, Sonja Grath, Andrew D. Moore, Erich Bornberg-Bauer. Rapid similarity search of proteins using alignments of domain arrangements
282 -- 283Andrew D. Moore, Andreas Held, Nicolas Terrapon, January Weiner, 3rd, Erich Bornberg-Bauer. DoMosaics: software for domain arrangement visualization and domain-centric analysis of proteins
284 -- 286Matthias Lienhard, Christina Grimm, Markus Morkel, Ralf Herwig, Lukas Chavez. MEDIPS: genome-wide differential coverage analysis of sequencing data derived from DNA enrichment experiments
287 -- 288João F. Matias Rodrigues, Christian von Mering. HPC-CLUST: distributed hierarchical clustering for large sets of nucleotide sequences
289 -- 291Toma Tebaldi, Erik Dassi, Galena Kostoska, Gabriella Viero, Alessandro Quattrone. tRanslatome: an R/Bioconductor package to portray translational control
292 -- 294Michael L. Blinov, James C. Schaff, Oliver Ruebenacker, Xintao Wei, Dan Vasilescu, Fei Gao, Frank Morgan, Li Ye, Anuradha Lakshminarayana, Ion I. Moraru, Leslie M. Loew. Pathway Commons at Virtual Cell: use of pathway data for mathematical modeling
295 -- 297Luke E. Ulrich, Igor B. Zhulin. SeqDepot: streamlined database of biological sequences and precomputed features
298 -- 300Rodrigo Ochoa, Mark Davies, George Papadatos, Francis Atkinson, John P. Overington. myChEMBL: a virtual machine implementation of open data and cheminformatics tools