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| 2999 | -- | 3003 | Irene Papatheodorou, Rudolfs Petrovs, Janet M. Thornton. Comparison of the mammalian insulin signalling pathway to invertebrates in the context of FOXO-mediated ageing |
| 3004 | -- | 3011 | Thomas Hackl, Rainer Hedrich, Jörg Schultz, Frank Förster. proovread: large-scale high-accuracy PacBio correction through iterative short read consensus |
| 3012 | -- | 3019 | Jessen T. Havill, Chinmoy Bhatiya, Steven M. Johnson, Joseph D. Sheets, Jeffrey S. Thompson. A new approach for detecting riboswitches in DNA sequences |
| 3020 | -- | 3028 | Benjamin Horvilleur, Nicolas Lartillot. Monte Carlo algorithms for Brownian phylogenetic models |
| 3029 | -- | 3035 | Christopher W. Wood, Marc Bruning, Amaurys Ávila Ibarra, Gail J. Bartlett, Andrew R. Thomson, Richard B. Sessions, R. Leo Brady, Derek N. Woolfson. CCBuilder: an interactive web-based tool for building, designing and assessing coiled-coil protein assemblies |
| 3036 | -- | 3043 | Aliccia Bollig-Fischer, Luca Marchetti, Cristina Mitrea, Jiusheng Wu, Adéle Kruger, Vincenzo Manca, Sorin Draghici. Modeling time-dependent transcription effects of HER2 oncogene and discovery of a role for E2F2 in breast cancer cell-matrix adhesion |
| 3044 | -- | 3053 | Megan Orr, Peng Liu, Dan Nettleton. An improved method for computing q-values when the distribution of effect sizes is asymmetric |
| 3054 | -- | 3061 | Chun-Pei Cheng, I-Ying Kuo, Hakan Alakus, Kelly A. Frazer, Olivier Harismendy, Yi-Ching Wang, Vincent S. Tseng. Network-based analysis identifies epigenetic biomarkers of esophageal squamous cell carcinoma progression |
| 3062 | -- | 3069 | Sihai Dave Zhao, Giovanni Parmigiani, Curtis Huttenhower, Levi Waldron. Más-o-menos: a simple sign averaging method for discrimination in genomic data analysis |
| 3070 | -- | 3077 | Junpeng Zhang, Thuc Duy Le, Lin Liu 0001, Bing Liu 0002, Jianfeng He 0001, Gregory J. Goodall, Jiuyong Li. Inferring condition-specific miRNA activity from matched miRNA and mRNA expression data |
| 3078 | -- | 3085 | Francesco Sambo, Barbara Di Camillo, Gianna Toffolo, Claudio Cobelli. Compression and fast retrieval of SNP data |
| 3086 | -- | 3092 | Mushthofa Mushthofa, Gustavo Torres, Yves Van de Peer, Kathleen Marchal, Martine De Cock. ASP-G: an ASP-based method for finding attractors in genetic regulatory networks |
| 3093 | -- | 3100 | Ingo Vogt, Jeanette Prinz, Karolina Worf, Mónica Campillos. Systematic analysis of gene properties influencing organ system phenotypes in mammalian perturbations |
| 3101 | -- | 3108 | Seunghwa Kang, Simon Kahan, Jason McDermott, Nicholas S. Flann, Ilya Shmulevich. Biocellion: accelerating computer simulation of multicellular biological system models |
| 3109 | -- | 3114 | Eduard Porta-Pardo, Adam Godzik. e-Driver: a novel method to identify protein regions driving cancer |
| 3115 | -- | 3117 | Claudia Calabrese, Domenico Simone, Maria Angela Diroma, Mariangela Santorsola, Cristiano Guttà, Giuseppe Gasparre, Ernesto Picardi, Graziano Pesole, Marcella Attimonelli. MToolBox: a highly automated pipeline for heteroplasmy annotation and prioritization analysis of human mitochondrial variants in high-throughput sequencing |
| 3118 | -- | 3119 | Ezequiel L. Nicolazzi, Daniela Iamartino, John L. Williams. AffyPipe: an open-source pipeline for Affymetrix Axiom genotyping workflow |
| 3120 | -- | 3122 | Yoli Shavit, Fiona Kathryn Hamey, Pietro Liò. FisHiCal: an R package for iterative FISH-based calibration of Hi-C data |
| 3123 | -- | 3124 | Donovan H. Parks, Gene W. Tyson, Philip Hugenholtz, Robert G. Beiko. STAMP: statistical analysis of taxonomic and functional profiles |
| 3125 | -- | 3127 | Jonathan Crabtree, Sonia Agrawal, Anup Mahurkar, Garry S. A. Myers, David A. Rasko, Owen White. Circleator: flexible circular visualization of genome-associated data with BioPerl and SVG |
| 3128 | -- | 3130 | Stefan Seemayer, Markus Gruber, Johannes Söding. CCMpred - fast and precise prediction of protein residue-residue contacts from correlated mutations |
| 3131 | -- | 3133 | Lou Gotz, Jodie L. Abrahams, Julien Mariethoz, Pauline M. Rudd, Niclas G. Karlsson, Nicolle H. Packer, Matthew P. Campbell, Frédérique Lisacek. GlycoDigest: a tool for the targeted use of exoglycosidase digestions in glycan structure determination |
| 3134 | -- | 3135 | Gabriel E. Hoffman, Jason G. Mezey, Eric E. Schadt. lrgpr: interactive linear mixed model analysis of genome-wide association studies with composite hypothesis testing and regression diagnostics in R |
| 3136 | -- | 3138 | Bo Wen, Shaohang Xu, Gloria M. Sheynkman, Qiang Feng, Liang Lin, Quanhui Wang, Xun Xu, Jun Wang, Siqi Liu. sapFinder: an R/Bioconductor package for detection of variant peptides in shotgun proteomics experiments |
| 3139 | -- | 3141 | Ahmed Mohamed, Timothy Hancock, Canh Hao Nguyen, Hiroshi Mamitsuka. NetPathMiner: R/Bioconductor package for network path mining through gene expression |
| 3142 | -- | 0 | Lei Zhang, Yu-Fang Pei, Xiaoying Fu, Yong Lin, Yu-Ping Wang, Hong-Wen Deng. FISH: fast and accurate diploid genotype imputation via segmental hidden Markov model |