Journal: Bioinformatics

Volume 30, Issue 22

3143 -- 3151Eduardo G. Gusmão, Christoph Dieterich, Martin Zenke, Ivan G. Costa. Detection of active transcription factor binding sites with the combination of DNase hypersensitivity and histone modifications
3152 -- 3158Ying Ding, Shaowu Tang, Serena G. Liao, Jia Jia, Steffi Oesterreich, Yan Lin, George C. Tseng. Bias correction for selecting the minimal-error classifier from many machine learning models
3159 -- 3165Timothy Daley, Andrew D. Smith. Modeling genome coverage in single-cell sequencing
3166 -- 3173Joshua Loving, Yozen Hernandez, Gary Benson. BitPAl: a bit-parallel, general integer-scoring sequence alignment algorithm
3174 -- 3180Yeting Zhang, Yazhou Sun. de novo nucleic acid diagnostic target discovery
3181 -- 3188Niclas Thomas, Katharine Best, Mattia Cinelli, Shlomit Reich-Zeliger, Hilah Gal, Eric Shifrut, Asaf Madi, Nir Friedman, John Shawe-Taylor, Benny Chain. Tracking global changes induced in the CD4 T-cell receptor repertoire by immunization with a complex antigen using short stretches of CDR3 protein sequence
3189 -- 3196Daniel Taylor, Gavin C. Cawley, Steven Hayward. Quantitative method for the assignment of hinge and shear mechanism in protein domain movements
3197 -- 3205Sungkyoung Choi, Sungyoung Lee, Sven Cichon, Markus M. Nöthen, Christoph Lange 0003, Taesung Park, Sungho Won. FARVAT: a family-based rare variant association test
3206 -- 3214Christoph Lippert, Jing Xiang, Danilo Horta, Christian Widmer, Carl Myers Kadie, David Heckerman, Jennifer Listgarten. Greater power and computational efficiency for kernel-based association testing of sets of genetic variants
3215 -- 3222Damian Smedley, Sebastian Köhler, Johanna Christina Czeschik, Joanna S. Amberger, Carol A. Bocchini, Ada Hamosh, Julian Veldboer, Tomasz Zemojtel, Peter N. Robinson. Walking the interactome for candidate prioritization in exome sequencing studies of Mendelian diseases
3223 -- 3231Dapeng Hao, Chuanxing Li, Shaojun Zhang, Jianping Lu, Yongshuai Jiang, Shiyuan Wang, Meng Zhou. Network-based analysis of genotype-phenotype correlations between different inheritance modes
3232 -- 3239Siu Hung Joshua Chan, Christian Solem, Peter Ruhdal Jensen, Ping Ji. Estimating biological elementary flux modes that decompose a flux distribution by the minimal branching property
3240 -- 3248Lana Yeganova, Won Kim, Sun Kim, W. John Wilbur. Retro: concept-based clustering of biomedical topical sets
3249 -- 3256Nikolas Papanikolaou, Georgios A. Pavlopoulos, Evangelos Pafilis, Theodosios Theodosiou, Reinhard Schneider 0002, Venkata P. Satagopam, Christos A. Ouzounis, Aristides G. Eliopoulos, Vasilis J. Promponas, Ioannis Iliopoulos. +: a knowledge integration platform for literature mining and concept discovery
3257 -- 3263Verena Starke, Andrew Steele. Thresher: an improved algorithm for peak height thresholding of microbial community profiles
3264 -- 3265Eun-Cheon Lim, Jonas Müller, Jörg Hagmann, Stefan R. Henz, Sang-Tae Kim, Detlef Weigel. Trowel: a fast and accurate error correction module for Illumina sequencing reads
3266 -- 3267David M. Curran, John S. Gilleard, James Wasmuth. Figmop: a profile HMM to identify genes and bypass troublesome gene models in draft genomes
3268 -- 3269Carolin Walter, Daniel Schuetzmann, Frank Rosenbauer, Martin Dugas. Basic4Cseq: an R/Bioconductor package for analyzing 4C-seq data
3270 -- 3271Phi-Vu Nguyen, Chandra Shekhar Verma, Samuel Ken-En Gan. DNAApp: a mobile application for sequencing data analysis
3272 -- 3273Michael Olejnik, Michel Steuwer, Sergei Gorlatch, Dominik Heider. gCUP: rapid GPU-based HIV-1 co-receptor usage prediction for next-generation sequencing
3274 -- 3275Heng Li. Fast construction of FM-index for long sequence reads
3276 -- 3278Anders Larsson. AliView: a fast and lightweight alignment viewer and editor for large datasets
3279 -- 3280Kazuo Yamashita, Kazuyoshi Ikeda, Karlou Mar Amada, Shide Liang, Yuko Tsuchiya, Haruki Nakamura, Hiroki Shirai, Daron M. Standley. Kotai Antibody Builder: automated high-resolution structural modeling of antibodies
3281 -- 3283Masahito Ohue, Takehiro Shimoda, Shuji Suzuki, Yuri Matsuzaki, Takashi Ishida, Yutaka Akiyama. MEGADOCK 4.0: an ultra-high-performance protein-protein docking software for heterogeneous supercomputers
3284 -- 3286Seon-Kyu Kim, Jong-Hwan Kim, Seok-Joong Yun, Wun-Jae Kim, Seon-Young Kim. APPEX: analysis platform for the identification of prognostic gene expression signatures in cancer
3287 -- 3288Michael Nodzenski, Michael J. Muehlbauer, James R. Bain, Anna C. Reisetter, William L. Lowe Jr., Denise M. Scholtens. Metabomxtr: an R package for mixture-model analysis of non-targeted metabolomics data
3289 -- 3290Qiaonan Duan, Zichen Wang, Nicolas F. Fernandez, Andrew D. Rouillard, Christopher M. Tan, Cyril H. Benes, Avi Ma'ayan. Drug/Cell-line Browser: interactive canvas visualization of cancer drug/cell-line viability assay datasets
3291 -- 3292David Breuer, Zoran Nikoloski. img2net: automated network-based analysis of imaged phenotypes