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| 457 | -- | 463 | Ruslan A. Soldatov, Svetlana V. Vinogradova, Andrey A. Mironov. RNASurface: fast and accurate detection of locally optimal potentially structured RNA segments |
| 464 | -- | 471 | Francisco Fernandes, Ana T. Freitas. slaMEM: efficient retrieval of maximal exact matches using a sampled LCP array |
| 472 | -- | 479 | Bin Liu 0014, Deyuan Zhang, Ruifeng Xu, Jinghao Xu, Xiaolong Wang, Qingcai Chen, Qiwen Dong, Kuo-Chen Chou. Combining evolutionary information extracted from frequency profiles with sequence-based kernels for protein remote homology detection |
| 480 | -- | 487 | Song Yan, Yun Li. BETASEQ: a powerful novel method to control type-I error inflation in partially sequenced data for rare variant association testing |
| 488 | -- | 496 | Nicolas Lartillot. A phylogenetic Kalman filter for ancestral trait reconstruction using molecular data |
| 497 | -- | 505 | Hua Zhang, Lukasz A. Kurgan. Sequence-based Gaussian network model for protein dynamics |
| 506 | -- | 513 | Chen Suo, Stefano Calza, Agus Salim, Yudi Pawitan. Joint estimation of isoform expression and isoform-specific read distribution using multisample RNA-Seq data |
| 514 | -- | 522 | Hongjie Zhu, Man Luo. Chemical structure informing statistical hypothesis testing in metabolomics |
| 523 | -- | 530 | Andreas Krämer, Jeff Green, Jack Pollard Jr., Stuart Tugendreich. Causal analysis approaches in Ingenuity Pathway Analysis |
| 531 | -- | 539 | Ferhat Alkan, Cesim Erten. BEAMS: backbone extraction and merge strategy for the global many-to-many alignment of multiple PPI networks |
| 540 | -- | 548 | Jialu Hu, Birte Kehr, Knut Reinert. NetCoffee: a fast and accurate global alignment approach to identify functionally conserved proteins in multiple networks |
| 549 | -- | 558 | Cong Zhou, Michael J. Walker, Andrew J. K. Williamson, Andrew Pierce, Carlo Berzuini, Caroline Dive, Anthony D. Whetton. A hierarchical statistical modeling approach to analyze proteomic isobaric tag for relative and absolute quantitation data |
| 559 | -- | 565 | Tomaz Hocevar, Janez Demsar. A combinatorial approach to graphlet counting |
| 566 | -- | 568 | Richard M. Leggett, Bernardo J. Clavijo, Leah Clissold, Matthew D. Clark, Mario Caccamo. NextClip: an analysis and read preparation tool for Nextera Long Mate Pair libraries |
| 569 | -- | 570 | José Colmenares, Jesús Ortiz, Walter Rocchia. GPU linear and non-linear Poisson-Boltzmann solver module for DelPhi |
| 571 | -- | 573 | Nicolas Jung, Frédéric Bertrand, Seiamak Bahram, Laurent Vallat, Myriam Maumy-Bertrand. Cascade: a R package to study, predict and simulate the diffusion of a signal through a temporal gene network |
| 574 | -- | 575 | Raghavendra Hosur, Suzanne Szak, Alice Thai, Norm Allaire, Jadwiga Bienkowska. ProbeSelect: selecting differentially expressed probes in transcriptional profile data |
| 576 | -- | 577 | Darren Kessner, John Novembre. forqs: forward-in-time simulation of recombination, quantitative traits and selection |
| 578 | -- | 580 | Michel Petitjean, Anne Vanet. VIRAPOPS: a forward simulator dedicated to rapidly evolved viral populations |
| 581 | -- | 583 | Jiarui Zhou, Ralf J. M. Weber, James William Allwood, Robert Mistrik, Zexuan Zhu, Zhen Ji, Siping Chen, Warwick B. Dunn, Shan He 0001, Mark R. Viant. in silico mass spectral fragmentation libraries |
| 584 | -- | 585 | Longfei Mao, Wynand S. Verwoerd. ORCA: a COBRA toolbox extension for model-driven discovery and analysis |
| 586 | -- | 587 | Cheng Chang, Jiyang Zhang, Mingfei Han, Jie Ma, Wei Zhang, Songfeng Wu, Kehui Liu, Hongwei Xie, Fuchu He, Yunping Zhu. SILVER: an efficient tool for stable isotope labeling LC-MS data quantitative analysis with quality control methods |
| 588 | -- | 589 | Denis Fourches, Maria F. Sassano, Bryan L. Roth, Alexander Tropsha. HTS navigator: freely accessible cheminformatics software for analyzing high-throughput screening data |
| 590 | -- | 592 | Muhammad A. Shah, Emily Denton, Lihua Liu, Matthieu Schapira. ChromoHub V2: cancer genomics |
| 593 | -- | 595 | Dennis Bromley, Steven J. Rysavy, Robert Su, Rudesh D. Toofanny, Tom Schmidlin, Valerie Daggett. DIVE: a data intensive visualization engine |
| 596 | -- | 0 | Sarah Sheppard, Nathan D. Lawson, Lihua Julie Zhu. Accurate identification of polyadenylation sites from 3′ end deep sequencing using a naïve Bayes classifier |