| 1049 | -- | 1055 | Xihao Hu, Thomas K. F. Wong, Zhi John Lu, Ting-Fung Chan, Terrence Chi Kong Lau, Siu-Ming Yiu, Kevin Y. Yip. Computational identification of protein binding sites on RNAs using high-throughput RNA structure-probing data |
| 1056 | -- | 1063 | Lei Bao, Minya Pu, Karen Messer. AbsCN-seq: a statistical method to estimate tumor purity, ploidy and absolute copy numbers from next-generation sequencing data |
| 1064 | -- | 1072 | Jan Schröder, Arthur Hsu, Samantha E. Boyle, Geoff Macintyre, Marek Cmero, Richard W. Tothill, Ricky W. Johnstone, Mark Shackleton, Anthony T. Papenfuss. Socrates: identification of genomic rearrangements in tumour genomes by re-aligning soft clipped reads |
| 1073 | -- | 1080 | Wanding Zhou, Tenghui Chen, Hao Zhao, Agda Karina Eterovic, Funda Meric-Bernstam, Gordon B. Mills, Ken Chen. Bias from removing read duplication in ultra-deep sequencing experiments |
| 1081 | -- | 1086 | Kamil S. Jaron, Jirí C. Moravec, Natália Martínková. SigHunt: horizontal gene transfer finder optimized for eukaryotic genomes |
| 1087 | -- | 1094 | Joao C. Guimaraes, Miguel Rocha, Adam P. Arkin, Guillaume Cambray. D-Tailor: automated analysis and design of DNA sequences |
| 1095 | -- | 1103 | Atsushi Kurotani, Alexander A. Tokmakov, Yutaka Kuroda, Yasuo Fukami, Kazuo Shinozaki, Tetsuya Sakurai. Correlations between predicted protein disorder and post-translational modifications in plants |
| 1104 | -- | 1111 | Josep Gregori, Miquel Salicru, Esteban Domingo, Alex Sánchez-Pla, Juan I. Esteban, Francisco Rodríguez-Frías, Josep Quer. Inference with viral quasispecies diversity indices: clonal and NGS approaches |
| 1112 | -- | 1119 | Ka Chun Wong, Zhaolei Zhang. SNPdryad: predicting deleterious non-synonymous human SNPs using only orthologous protein sequences |
| 1120 | -- | 1128 | Ha X. Dang, Christopher B. Lawrence. Allerdictor: fast allergen prediction using text classification techniques |
| 1129 | -- | 1137 | Mario Valle, Hannes Schabauer, Christoph Pacher, Heinz Stockinger, Alexandros Stamatakis, Marc Robinson-Rechavi, Nicolas Salamin. Optimization strategies for fast detection of positive selection on phylogenetic trees |
| 1138 | -- | 1145 | Derek J. Pitman, Christian D. Schenkelberg, Yao-ming Huang, Frank D. Teets, Daniel DiTursi, Christopher Bystroff. Improving computational efficiency and tractability of protein design using a piecemeal approach. A strategy for parallel and distributed protein design |
| 1146 | -- | 1153 | Antti Häkkinen, Meenakshisundaram Kandhavelu, Stefania Garasto, Andre S. Ribeiro. Estimation of fluorescence-tagged RNA numbers from spot intensities |
| 1154 | -- | 1162 | Hans-Ulrich Klein, Martin Schäfer, Bo T. Porse, Marie S. Hasemann, Katja Ickstadt, Martin Dugas. Integrative analysis of histone ChIP-seq and transcription data using Bayesian mixture models |
| 1163 | -- | 1171 | Ming Wu, Christina Chan. Prediction of therapeutic microRNA based on the human metabolic network |
| 1172 | -- | 1174 | Hamid Younesy, Torsten Möller, Alireza Heravi Moussavi, Jeffrey B. Cheng, Joseph F. Costello, Matthew C. Lorincz, Mohammad M. Karimi, Steven J. M. Jones. ALEA: a toolbox for allele-specific epigenomics analysis |
| 1175 | -- | 1176 | Jianchao Yao, Kelvin Xi Zhang, Melissa Kramer, Matteo Pellegrini, W. Richard McCombie. FamAnn: an automated variant annotation pipeline to facilitate target discovery for family-based sequencing studies |
| 1177 | -- | 1179 | L. Cebamanos, A. Gray, I. Stewart, A. Tenesa. Regional heritability advanced complex trait analysis for GPU and traditional parallel architectures |
| 1180 | -- | 1182 | An Xiao, Zhenchao Cheng, Lei Kong, Zuoyan Zhu, Shuo Lin, Ge Gao, Bo Zhang. CasOT: a genome-wide Cas9/gRNA off-target searching tool |
| 1183 | -- | 1184 | Emmanuel Dimont, Oliver Hofmann, Shannan J. Ho Sui, Alistair R. R. Forrest, Hideya Kawaji, Winston Hide. CAGExploreR: an R package for the analysis and visualization of promoter dynamics across multiple experiments |
| 1185 | -- | 1186 | Peter J. van der Most, Ahmad Vaez, Bram P. Prins, M. Loretto Munoz, Harold Snieder, Behrooz Z. Alizadeh, Ilja M. Nolte. QCGWAS: A flexible R package for automated quality control of genome-wide association results |
| 1187 | -- | 1189 | Jean-Marie Cornuet, Pierre Pudlo, Julien Veyssier, Alexandre Dehne-Garcia, Mathieu Gautier, Raphael Leblois, Jean-Michel Marin, Arnaud Estoup. DIYABC v2.0: a software to make approximate Bayesian computation inferences about population history using single nucleotide polymorphism, DNA sequence and microsatellite data |
| 1190 | -- | 1192 | Daogang Guan, Jiaofang Shao, Youping Deng, Panwen Wang, Zhongying Zhao, Yan Liang, Junwen Wang, Bin Yan. CMGRN: a web server for constructing multilevel gene regulatory networks using ChIP-seq and gene expression data |