Matteo Pellegrini - researchr alias

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Viewing Publication 1 - 25 from 25

2023

Beyond Obscuration and Visibility: Thoughts on the Different Strategies of Gender-Fair Language in ItalianMartina Rosola, Simona Frenda, Alessandra Teresa Cignarella, Matteo Pellegrini, Andrea Marra, Mara Floris. clic-it 2023: [doi]

2022

Computational Morphology with OntoLex-MorphChristian Chiarcos, Katerina Gkirtzou, Anas Fahad Khan, Penny Labropoulou, Marco Passarotti, Matteo Pellegrini. acl-ldl 2022: 78-86 [doi]

Editorial: Computational Methods for Analysis of DNA Methylation DataPietro di Lena, Christine Nardini, Matteo Pellegrini. fbinf, 2, 2022. [doi]

The Index Thomisticus Treebank as Linked Data in the LiLa Knowledge BaseFrancesco Mambrini, Marco Passarotti, Giovanni Moretti, Matteo Pellegrini. lrec 2022: 4022-4029 [doi]

Enhancing Derivational Information on Latin Lemmas in the LiLa Knowledge Base. A Structural and Diachronic ExtensionMatteo Pellegrini, Marco Passarotti, Eleonora Litta, Francesco Mambrini, Giovanni Moretti, Claudia Corbetta, Martina Verdelli. pbml, 119:67-92, 2022. [doi]

2021

Systematic evaluation of transcriptomics-based deconvolution methods and references using thousands of clinical samplesBrian B. Nadel, Meritxell Oliva, Benjamin L. Shou, Keith Mitchell, Feiyang Ma, Dennis J. Montoya, Alice Mouton, Sarah Kim-Hellmuth, Barbara E. Stranger, Matteo Pellegrini, Serghei Mangul. bib, 22(6), 2021. [doi]

2020

The Epigenetic Pacemaker: modeling epigenetic states under an evolutionary frameworkColin Farrell, Sagi Snir, Matteo Pellegrini. bioinformatics, 36(17):4662-4663, 2020. [doi]

ACTINN: automated identification of cell types in single cell RNA sequencingFeiyang Ma, Matteo Pellegrini. bioinformatics, 36(2):533-538, 2020. [doi]

(Stem and Word) Predictability in Italian Verb Paradigms: An Entropy-Based Study Exploiting the New Resource LeFFIMatteo Pellegrini, Alessandra Teresa Cignarella. clic-it 2020: [doi]

2019

Identification of Bridging Centrality in Complex NetworksWei Liu, Matteo Pellegrini, Aiping Wu. access, 7:93123-93130, 2019. [doi]

2018

CGmapTools improves the precision of heterozygous SNV calls and supports allele-specific methylation detection and visualization in bisulfite-sequencing dataWeilong Guo, Ping Zhu, Matteo Pellegrini, Michael Q. Zhang, Xiangfeng Wang, Zhongfu Ni. bioinformatics, 34(3):381-387, 2018. [doi]

LatInfLexi: an Inflected Lexicon of Latin VerbsMatteo Pellegrini, Marco Passarotti. clic-it 2018: [doi]

2016

A Statistical Framework to Identify Deviation from Time Linearity in Epigenetic AgingSagi Snir, Bridgett M. vonHoldt, Matteo Pellegrini. ploscb, 12(11), 2016. [doi]

2014

Gene expression and nucleotide composition are associated with genic methylation level in Oryza sativaEran Elhaik, Matteo Pellegrini, Tatiana Tatarinova. bmcbi, 15:23, 2014. [doi]

FamAnn: an automated variant annotation pipeline to facilitate target discovery for family-based sequencing studiesJianchao Yao, Kelvin Xi Zhang, Melissa Kramer, Matteo Pellegrini, W. Richard McCombie. bioinformatics, 30(8):1175-1176, 2014. [doi]

2011

Algal Functional Annotation Tool: a web-based analysis suite to functionally interpret large gene lists using integrated annotation and expression dataDavid Lopez, David Casero, Shawn Cokus, Sabeeha S. Merchant, Matteo Pellegrini. bmcbi, 12:282, 2011. [doi]

Regulation of the yeast metabolic cycle by transcription factors with periodic activitiesAliz R. Rao, Matteo Pellegrini. bmcsb, 5:160, 2011. [doi]

2010

BS Seeker: precise mapping for bisulfite sequencingPao-Yang Chen, Shawn Cokus, Matteo Pellegrini. bmcbi, 11:203, 2010. [doi]

2009

cis-Regulatory LogicDebopriya Das, Matteo Pellegrini, Joe W. Gray. ploscb, 5(1), 2009. [doi]

Detecting coordinated regulation of multi-protein complexes using logic analysis of gene expressionEinat Sprinzak, Shawn Cokus, Todd O. Yeates, David Eisenberg, Matteo Pellegrini. bmcsb, 3:115, 2009. [doi]

2008

Mycobacterium tuberculosisRobert Riley, Matteo Pellegrini, David Eisenberg. ploscb, 4(9), 2008. [doi]

2007

An improved method for identifying functionally linked proteins using phylogenetic profilesShawn Cokus, Sayaka Mizutani, Matteo Pellegrini. bmcbi, 8(S-4), 2007. [doi]

2006

Modelling the network of cell cycle transcription factors in the yeast ::::Saccharomyces cerevisiae::::Shawn Cokus, Sherri Rose, David Haynor, Niels GrÃ¸nbech-Jensen, Matteo Pellegrini. bmcbi, 7:381, 2006. [doi]

2003

Inferring protein interactions from phylogenetic distance matricesJason Gertz, Georgiy Elfond, Anna Shustrova, Matt Weisinger, Matteo Pellegrini, Shawn Cokus, Bruce Rothschild. bioinformatics, 19(16):2039-2045, 2003.

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