| 1193 | -- | 1197 | Joseph P. Cornish, Neus Sanchez-Alberola, Patrick K. O'Neill, Ronald O'Keefe, Jameel Gheba, Ivan Erill. Characterization of the SOS meta-regulon in the human gut microbiome |
| 1198 | -- | 1204 | Moritz Gerstung, Elli Papaemmanuil, Peter J. Campbell. Subclonal variant calling with multiple samples and prior knowledge |
| 1205 | -- | 1213 | Hannes Planatscher, Frederik Weiß, David Eisen, B. H. J. van den Berg, Andreas Zell, Thomas Joos, Oliver Poetz. Identification of short terminal motifs enriched by antibodies using peptide mass fingerprinting |
| 1214 | -- | 1219 | Chengxi Ye, Chiaowen Hsiao, Héctor Corrada Bravo. BlindCall: ultra-fast base-calling of high-throughput sequencing data by blind deconvolution |
| 1220 | -- | 1227 | Gorka Prieto, Asier Fullaondo, Jose A. Rodriguez. Prediction of nuclear export signals using weighted regular expressions (Wregex) |
| 1228 | -- | 1235 | Jared T. Simpson. Exploring genome characteristics and sequence quality without a reference |
| 1236 | -- | 1240 | Philip Jones, David Binns, Hsin-Yu Chang, Matthew Fraser, Weizhong Li, Craig McAnulla, Hamish McWilliam, John Maslen, Alex Mitchell, Gift Nuka, Sebastien Pesseat, Antony F. Quinn, Amaia Sangrador-Vegas, Maxim Scheremetjew, Siew-Yit Yong, Rodrigo Lopez, Sarah Hunter. InterProScan 5: genome-scale protein function classification |
| 1241 | -- | 1249 | Linda Dib, Daniele Silvestro, Nicolas Salamin. Evolutionary footprint of coevolving positions in genes |
| 1250 | -- | 1258 | Ali Esmaili-Taheri, Mohammad Ganjtabesh, Morteza Mohammad Noori. Evolutionary solution for the RNA design problem |
| 1259 | -- | 1265 | Noël Malod-Dognin, Natasa Przulj. GR-Align: fast and flexible alignment of protein 3D structures using graphlet degree similarity |
| 1266 | -- | 1272 | Richard Durbin. Efficient haplotype matching and storage using the positional Burrows-Wheeler transform (PBWT) |
| 1273 | -- | 1279 | Stefan Maetschke, Mark A. Ragan. Characterizing cancer subtypes as attractors of Hopfield networks |
| 1280 | -- | 1286 | Pierre Mahé, Maud Arsac, Sonia Chatellier, Valérie Monnin, Nadine Perrot, Sandrine Mailler, Victoria Girard, Mahendrasingh Ramjeet, Jérémy Surre, Bruno Lacroix, Alex van Belkum, Jean-Baptiste Veyrieras. Automatic identification of mixed bacterial species fingerprints in a MALDI-TOF mass-spectrum |
| 1287 | -- | 1289 | Burcu Bakir-Gungor, Ece Egemen, Osman Ugur Sezerman. PANOGA: a web server for identification of SNP-targeted pathways from genome-wide association study data |
| 1290 | -- | 1291 | David Sims, Nicholas E. Ilott, Stephen N. Sansom, Ian M. Sudbery, Jethro S. Johnson, Katherine A. Fawcett, Antonio J. Berlanga-Taylor, Sebastian Luna-Valero, Chris P. Ponting, Andreas Heger. CGAT: computational genomics analysis toolkit |
| 1292 | -- | 1294 | Samuel A. Assefa, Mark D. Preston, Susana G. Campino, Harold Ocholla, Colin J. Sutherland, Taane G. Clark. estMOI: estimating multiplicity of infection using parasite deep sequencing data |
| 1295 | -- | 1296 | Xin Lu, Roman K. Thomas, Martin Peifer. CGARS: cancer genome analysis by rank sums |
| 1297 | -- | 1299 | Yongbing Zhao, Xinmiao Jia, Junhui Yang, Yunchao Ling, Zhang Zhang, Jun Yu, Jiayan Wu, Jing-Fa Xiao. PanGP: A tool for quickly analyzing bacterial pan-genome profile |
| 1300 | -- | 1301 | Vipin T. Sreedharan, Sebastian J. Schultheiß, Géraldine Jean, André Kahles, Regina Bohnert, Philipp Drewe, Pramod Mudrakarta, Nico Görnitz, Georg Zeller, Gunnar Rätsch. Oqtans: the RNA-seq workbench in the cloud for complete and reproducible quantitative transcriptome analysis |
| 1302 | -- | 1304 | Michael T. McCarthy, Christopher A. O'Callaghan. PeaKDEck: a kernel density estimator-based peak calling program for DNaseI-seq data |
| 1305 | -- | 1307 | Glen Stecher, Li Liu, Maxwell Sanderford, Daniel Peterson, Koichiro Tamura, Sudhir Kumar. MEGA-MD: molecular evolutionary genetics analysis software with mutational diagnosis of amino acid variation |
| 1308 | -- | 1309 | Garry Jolley-Rogers, Temi Varghese, Paul Harvey, Nick dos Remedios, Joseph T. Miller. PhyloJIVE: Integrating biodiversity data with the Tree of Life |
| 1310 | -- | 1311 | Jose Manuel Santorum, Diego Darriba, Guillermo L. Taboada, David Posada. jmodeltest.org: selection of nucleotide substitution models on the cloud |
| 1312 | -- | 1313 | Alexandros Stamatakis. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies |
| 1314 | -- | 1315 | Alejandro Panjkovich, Xavier Daura. PARS: a web server for the prediction of Protein Allosteric and Regulatory Sites |
| 1316 | -- | 1318 | Qiang Fu, Ana Carolina Fierro, Pieter Meysman, Aminael Sánchez-Rodríguez, Klaas Vandepoele, Kathleen Marchal, Kristof Engelen. MAGIC: access portal to a cross-platform gene expression compendium for maize |
| 1319 | -- | 1321 | Ivan Montiel, Charlotte Konikoff, Bremen Braun, Mary Packard, Sian L. Gramates, Qian Sun, Jieping Ye, Sudhir Kumar. Drosophila embryos |
| 1322 | -- | 1324 | Laurent Gatto, Lisa M. Breckels, Samuel Wieczorek, Thomas Burger, Kathryn S. Lilley. Mass-spectrometry-based spatial proteomics data analysis using pRoloc and pRolocdata |
| 1325 | -- | 1326 | Yupeng Cun, Holger Fröhlich. netClass: an R-package for network based, integrative biomarker signature discovery |
| 1327 | -- | 1328 | Paul A. Jensen, Jason A. Papin. MetDraw: automated visualization of genome-scale metabolic network reconstructions and high-throughput data |
| 1329 | -- | 1330 | Kieran O'Neill, Adrin Jalali, Nima Aghaeepour, Holger Hoos, Ryan R. Brinkman. Enhanced flowType/RchyOptimyx: a Bioconductor pipeline for discovery in high-dimensional cytometry data |
| 1331 | -- | 1332 | Jörn Starruß, Walter de Back, Lutz Brusch, Andreas Deutsch. Morpheus: a user-friendly modeling environment for multiscale and multicellular systems biology |
| 1333 | -- | 1335 | Jamey D. Young. INCA: a computational platform for isotopically non-stationary metabolic flux analysis |
| 1336 | -- | 1337 | Ricardo R. Silva, Fabien Jourdan, Diego M. Salvanha, Fabien Letisse, Emilien L. Jamin, Simone Guidetti-Gonzalez, Carlos A. Labate, Ricardo Z. N. Vêncio. R package for Bayesian probabilistic annotation of LC-MS-based metabolomics |
| 1338 | -- | 1339 | Simon Jupp, James Malone, Jerven Bolleman, Marco Brandizi, Mark Davies, Leyla J. Garcia, Anna Gaulton, Sebastien Gehant, Camille Laibe, Nicole Redaschi, Sarala M. Wimalaratne, Maria Jesus Martin, Nicolas Le Novère, Helen E. Parkinson, Ewan Birney, Andrew M. Jenkinson. The EBI RDF platform: linked open data for the life sciences |
| 1340 | -- | 1342 | Jie Zheng, Zuoshuang Xiang, Christian J. Stoeckert Jr., Yongqun He. Ontodog: a web-based ontology community view generation tool |