Taane G. Clark - researchr alias

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Viewing Publication 1 - 14 from 14

2023

Bayesian compositional regression with microbiome features via variational inferenceDarren A. V. Scott, Ernest D. Benavente, Julian Libiseller-Egger, Dmitry V. Fedorov, Jody Phelan, Elena Ilina, Polina O. Tikhonova, Alexander Kudryavstev, Julia Galeeva, Taane G. Clark, Alex Lewin. bmcbi, 24(1):210, December 2023. [doi]

2022

Mycobacterium tuberculosis for clinical and epidemiological applicationsPaula J. Gómez-González, Susana G. Campino, Jody Phelan, Taane G. Clark. bib, 23(5), 2022. [doi]

COVID-profiler: a webserver for the analysis of SARS-CoV-2 sequencing dataJody Phelan, Wouter Deelder, Daniel Ward, Susana G. Campino, Martin L. Hibberd, Taane G. Clark. bmcbi, 23(1):137, December 2022. [doi]

2020

Robust detection of point mutations involved in multidrug-resistant Mycobacterium tuberculosis in the presence of co-occurrent resistance markersJulian Libiseller-Egger, Jody Phelan, Susana Campino, Fady R. Mohareb, Taane G. Clark. ploscb, 16(12), 2020. [doi]

2019

PrimedRPA: primer design for recombinase polymerase amplification assaysMatthew Higgins, Matt Ravenhall, Daniel Ward, Jody Phelan, Amy Ibrahim, Matthew S. Forrest, Taane G. Clark, Susana G. Campino. bioinformatics, 35(4):682-684, 2019. [doi]

SV-Pop: population-based structural variant analysis and visualizationMatt Ravenhall, Susana G. Campino, Taane G. Clark. bmcbi, 20(1), 2019. [doi]

2015

PhyTB: Phylogenetic tree visualisation and sample positioning for M. tuberculosisErnest D. Benavente, Francesc Coll, Nick Furnham, Ruth McNerney, Judith R. Glynn, Susana G. Campino, Arnab Pain, Fady R. Mohareb, Taane G. Clark. bmcbi, 16:155, 2015. [doi]

2014

estMOI: estimating multiplicity of infection using parasite deep sequencing dataSamuel A. Assefa, Mark D. Preston, Susana G. Campino, Harold Ocholla, Colin J. Sutherland, Taane G. Clark. bioinformatics, 30(9):1292-1294, 2014. [doi]

SVAMP: sequence variation analysis, maps and phylogenyRaeece Naeem, Lailatul Hidayah, Mark D. Preston, Taane G. Clark, Arnab Pain. bioinformatics, 30(15):2227-2229, 2014. [doi]

2012

2010

A Bayesian approach using covariance of single nucleotide polymorphism data to detect differences in linkage disequilibrium patterns between groups of individualsTaane G. Clark, Susana G. Campino, Elisa Anastasi, Sarah Auburn, Yik Y. Teo, Kerrin S. Small, Kirk A. Rockett, Dominic Kwiatkowski, Christopher C. Holmes. bioinformatics, 26(16):1999-2003, 2010. [doi]

2009

SnoopCGH: software for visualizing comparative genomic hybridization dataJacob Almagro-Garcia, Magnus Magnus Manske, Celine Carret, Susana Campino, Sarah Auburn, Bronwyn L. MacInnis, Gareth Maslen, Arnab Pain, Christopher I. Newbold, Dominic Kwiatkowski, Taane G. Clark. bioinformatics, 25(20):2732-2733, 2009. [doi]

2007

A genotype calling algorithm for the Illumina BeadArray platformYik Y. Teo, Michael Inouye, Kerrin S. Small, Rhian Gwilliam, Panagiotis Deloukas, Dominic Kwiatkowski, Taane G. Clark. bioinformatics, 23(20):2741-2746, 2007. [doi]

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