Journal: Bioinformatics

Volume 32, Issue 10

1441 -- 1445Luis Sánchez-Pulido, Chris P. Ponting. Vasohibins: new transglutaminase-like cysteine proteases possessing a non-canonical Cys-His-Ser catalytic triad
1446 -- 1453Yongseok Park, Hao Wu. Differential methylation analysis for BS-seq data under general experimental design
1454 -- 1461Christian D. Schenkelberg, Christopher Bystroff. Protein backbone ensemble generation explores the local structural space of unseen natural homologs
1462 -- 1470B. Viart, C. Dias-Lopes, E. Kozlova, C. F. B. Oliveira, C. Nguyen, G. Neshich, C. Chávez-Olórtegui, F. Molina, L. F. Felicori. EPI-peptide designer: a tool for designing peptide ligand libraries based on epitope-paratope interactions
1471 -- 1478Sanjay Agravat, Xuezheng Song, Teerapat Rojsajjakul, Richard D. Cummings, David F. Smith. Computational approaches to define a human milk metaglycome
1479 -- 1485Halit Ongen, Alfonso Buil, Andrew Anand Brown, Emmanouil T. Dermitzakis, Olivier Delaneau. Fast and efficient QTL mapper for thousands of molecular phenotypes
1486 -- 1492Gabriel H. Murillo, Na You, Xiaoquan Su, Wei Cui, Muredach P. Reilly, Mingyao Li, Kang Ning, Xinping Cui. MultiGeMS: detection of SNVs from multiple samples using model selection on high-throughput sequencing data
1493 -- 1501Christian Benner, Chris C. A. Spencer, Aki S. Havulinna, Veikko Salomaa, Samuli Ripatti, Matti Pirinen. FINEMAP: efficient variable selection using summary data from genome-wide association studies
1502 -- 1508Daniel Stöckel, Tim Kehl, Patrick Trampert, Lara Schneider, Christina Backes, Nicole Ludwig, Andreas Gerasch, Michael Kaufmann 0001, Manfred Gessler, Norbert Graf, Eckart Meese, Andreas Keller, Hans-Peter Lenhof. Multi-omics enrichment analysis using the GeneTrail2 web service
1509 -- 1517Zhen Niu, Deborah Chasman, Amie J. Eisfeld, Yoshihiro Kawaoka, Sushmita Roy. Multi-task consensus clustering of genome-wide transcriptomes from related biological conditions
1518 -- 1526Muaaz Gul Awan, Fahad Saeed. MS-REDUCE: an ultrafast technique for reduction of big mass spectrometry data for high-throughput processing
1527 -- 1535Martin Strazar, Marinka Zitnik, Blaz Zupan, Jernej Ule, Tomaz Curk. Orthogonal matrix factorization enables integrative analysis of multiple RNA binding proteins
1536 -- 1543Raymond G. Cavalcante, Snehal Patil, Terry E. Weymouth, Kestutis G. Bendinskas, Alla Karnovsky, Maureen A. Sartor. ConceptMetab: exploring relationships among metabolite sets to identify links among biomedical concepts
1544 -- 1551Lei Du, Heng Huang, Jingwen Yan, Sungeun Kim, Shannon L. Risacher, Mark Inlow, Jason H. Moore, Andrew J. Saykin, Li Shen. Structured sparse canonical correlation analysis for brain imaging genetics: an improved GraphNet method
1552 -- 1554Ahmad Vaez, Peter J. van der Most, Bram P. Prins, Harold Snieder, Edwin R. van den Heuvel, Behrooz Z. Alizadeh, Ilja M. Nolte. lodGWAS: a software package for genome-wide association analysis of biomarkers with a limit of detection
1555 -- 1556Ge Tan, Boris Lenhard. TFBSTools: an R/bioconductor package for transcription factor binding site analysis
1557 -- 1558Karl W. Kroll, Ann-Katherin Eisfeld, Gerard Lozanski, Clara D. Bloomfield, John C. Byrd, James S. Blachly. MuCor: mutation aggregation and correlation
1559 -- 1561Monica-Andreea Dragan, Ismail Moghul, Anurag Priyam, Claudio Bustos, Yannick Wurm. GeneValidator: identify problems with protein-coding gene predictions
1562 -- 1564Jorge González-Domínguez, Bertil Schmidt. ParDRe: faster parallel duplicated reads removal tool for sequencing studies
1565 -- 1567Erik S. Wright, Kalin H. Vetsigian. DesignSignatures: a tool for designing primers that yields amplicons with distinct signatures
1568 -- 1570Matías R. Machado, Sergio Pantano. SIRAH tools: mapping, backmapping and visualization of coarse-grained models
1571 -- 1573Sikander Hayat, Christoph Peters, Nanjiang Shu, Konstantinos D. Tsirigos, Arne Elofsson. Inclusion of dyad-repeat pattern improves topology prediction of transmembrane β-barrel proteins
1574 -- 1576Shuai Li, Qiancheng Shen, Minyi Su, Xinyi Liu, Shaoyong Lu, Zhongjie Chen, Renxiao Wang, Jian Zhang. Alloscore: a method for predicting allosteric ligand-protein interactions
1577 -- 1579Michael Turewicz, Maike Ahrens, Caroline May, Katrin Marcus, Martin Eisenacher. PAA: an R/bioconductor package for biomarker discovery with protein microarrays
1580 -- 1582Kelly M. Burkett, Brad McNeney, Jinko Graham. Sampletrees and Rsampletrees: sampling gene genealogies conditional on SNP genotype data
1583 -- 1585Johannes Rainer, Daniel Taliun, Yuri D'Elia, Cristian Pattaro, Francisco S. Domingues, Christian X. Weichenberger. FamAgg: an R package to evaluate familial aggregation of traits in large pedigrees
1586 -- 1588Frank T. Bergmann, Sven Sahle, Christoph Zimmer. Piecewise parameter estimation for stochastic models in COPASI
1589 -- 1591Daniel K. Witvliet, Alexey Strokach, Andrés Felipe Giraldo-Forero, Joan Teyra, Recep Colak, Philip M. Kim. ELASPIC web-server: proteome-wide structure-based prediction of mutation effects on protein stability and binding affinity
1592 -- 1594Magnus D. Vigeland, Kristina S. Gjøtterud, Kaja K. Selmer. FILTUS: a desktop GUI for fast and efficient detection of disease-causing variants, including a novel autozygosity detector
1595 -- 1597Yining Liu, Min Zhao. lnCaNet: pan-cancer co-expression network for human lncRNA and cancer genes
1598 -- 1600Michael J. Meyer, Philip Geske, Haiyuan Yu. BISQUE: locus- and variant-specific conversion of genomic, transcriptomic and proteomic database identifiers