Journal: Bioinformatics

Volume 32, Issue 4

481 -- 489Guido Capitani, Jose M. Duarte, Kumaran Baskaran, Spencer Bliven, Joseph C. Somody. Understanding the fabric of protein crystals: computational classification of biological interfaces and crystal contacts
490 -- 496Haoyang Zeng, Tatsunori B. Hashimoto, Daniel D. Kang, David K. Gifford. GERV: a statistical method for generative evaluation of regulatory variants for transcription factor binding
497 -- 504Uwe Baier, Timo Beller, Enno Ohlebusch. Graphical pan-genome analysis with compressed suffix trees and the Burrows-Wheeler transform
505 -- 510M. Kroon, Eric-Wubbo Lameijer, N. Lakenberg, Jayne Y. Hehir-Kwa, D. T. Thung, P. Eline Slagboom, Joost N. Kok, Kai Ye. Detecting dispersed duplications in high-throughput sequencing data using a database-free approach
511 -- 517Massimo Andreatta, Morten Nielsen. Gapped sequence alignment using artificial neural networks: application to the MHC class I system
518 -- 522Sarah Bastkowski, Vincent Moulton, Andreas Spillner 0001, Taoyang Wu. The minimum evolution problem is hard: a link between tree inference and graph clustering problems
523 -- 532Alex Lewin, Habib Saadi, James E. Peters, Aida Moreno-Moral, James C. Lee, Kenneth G. C. Smith, Enrico Petretto, Leonardo Bottolo, Sylvia Richardson. MT-HESS: an efficient Bayesian approach for simultaneous association detection in OMICS datasets, with application to eQTL mapping in multiple tissues
533 -- 541Sheida Nabavi, Daniel Schmolze, Mayinuer Maitituoheti, Sadhika Malladi, Andrew H. Beck. EMDomics: a robust and powerful method for the identification of genes differentially expressed between heterogeneous classes
542 -- 548Qiongshi Lu, Xinwei Yao, Yiming Hu, Hongyu Zhao. GenoWAP: GWAS signal prioritization through integrated analysis of genomic functional annotation
549 -- 556Emile R. Chimusa, Mamana Mbiyavanga, Gaston K. Mazandu, Nicola J. Mulder. ancGWAS: a post genome-wide association study method for interaction, pathway and ancestry analysis in homogeneous and admixed populations
557 -- 562Po-Ju Yao, Ren Hua Chung. SeqSIMLA2_exact: simulate multiple disease sites in large pedigrees with given disease status for diseases with low prevalence
563 -- 570Martin Scharm, Olaf Wolkenhauer, Dagmar Waltemath. An algorithm to detect and communicate the differences in computational models describing biological systems
571 -- 578Thorsten Will, Volkhard Helms. PPIXpress: construction of condition-specific protein interaction networks based on transcript expression
579 -- 586Chen Wang, Gang Hu, Kui Wang, Michal Brylinski, Lei Xie, Lukasz A. Kurgan. PDID: database of molecular-level putative protein-drug interactions in the structural human proteome
587 -- 589Nathan C. Sheffield, Christoph Bock. LOLA: enrichment analysis for genomic region sets and regulatory elements in R and Bioconductor
590 -- 592Heng Li. BGT: efficient and flexible genotype query across many samples
593 -- 595Kathleen Oros Klein, Stepan Grinek, Sasha Bernatsky, Luigi Bouchard, Antonio Ciampi, Ines Colmegna, Jean-Philippe Fortin, Long Gao, Marie-France Hivert, Marie Hudson, Michael S. Kobor, Aurélie Labbe, Julia L. MacIsaac, Michael J. Meaney, Alexander M. Morin, Kieran J. O'Donnell, Tomi Pastinen, Marinus H. Van Ijzendoorn, Gregory Voisin, Celia M. T. Greenwood. funtooNorm: an R package for normalization of DNA methylation data when there are multiple cell or tissue types
596 -- 598Jeffrey Staples, Lynette Ekunwe, Ethan M. Lange, James G. Wilson, Deborah A. Nickerson, Jennifer E. Below. PRIMUS: improving pedigree reconstruction using mitochondrial and Y haplotypes
599 -- 601Cyril Denby Wilkes, Olivier Arnaiz, Linda Sperling. Paramecium interspersed DNA elimination studies
602 -- 604Mayya Sedova, Lukasz Jaroszewski, Adam Godzik. Protael: protein data visualization library for the web
605 -- 607Yu-Wei Wu, Blake A. Simmons, Steven W. Singer. MaxBin 2.0: an automated binning algorithm to recover genomes from multiple metagenomic datasets
608 -- 610François Chevenet, Jean-Philippe Doyon, Céline Scornavacca, Edwin Jacox, Emmanuelle Jousselin, Vincent Berry. SylvX: a viewer for phylogenetic tree reconciliations
611 -- 613Hyojung Ryu, GyuTae Lim, Bong Hyun Sung, Jinhyuk Lee. NMRe: a web server for NMR protein structure refinement with high-quality structure validation scores
614 -- 615Lin Wang, Min Zhang, Emil Alexov. a of proteins, RNAs and DNAs
616 -- 618Alexey G. Kikhney, Alejandro Panjkovich, Anna V. Sokolova, Dmitri I. Svergun. DARA: a web server for rapid search of structural neighbours using solution small angle X-ray scattering data
619 -- 620Hirofumi Suzuki, Takeshi Kawabata, Haruki Nakamura. Omokage search: shape similarity search service for biomolecular structures in both the PDB and EMDB
621 -- 623Matthieu Chartier, Etienne Adriansen, Rafael Najmanovich. IsoMIF Finder: online detection of binding site molecular interaction field similarities
624 -- 626Ming-Huei Chen, Qiong Yang. RVFam: an R package for rare variant association analysis with family data
627 -- 628António Múrias dos Santos, Maria Pilar Cabezas, Ana Isabel Tavares, Raquel Xavier, Madalena Branco. tcsBU: a tool to extend TCS network layout and visualization
629 -- 631Bruce E. Shapiro, Eric Mjolsness. Pycellerator: an arrow-based reaction-like modelling language for biological simulations
632 -- 634Jan Winter, Marco Breinig, Florian Heigwer, Dirk Brügemann, Svenja Leible, Oliver Pelz, Tianzuo Zhan, Michael Boutros. caRpools: an R package for exploratory data analysis and documentation of pooled CRISPR/Cas9 screens
635 -- 637Juan J. Diaz-Montana, Owen J. L. Rackham, Norberto Díaz-Díaz, Enrico Petretto. Web-based Gene Pathogenicity Analysis (WGPA): a web platform to interpret gene pathogenicity from personal genome data
638 -- 640Caterina Barillari, Diana S. M. Ottoz, Juan Mariano Fuentes-Serna, Chandrasekhar Ramakrishnan, Bernd Rinn, Fabian Rudolf. openBIS ELN-LIMS: an open-source database for academic laboratories