Journal: Bioinformatics

Volume 33, Issue 18

2791 -- 2798Nora Rieber, Regina Bohnert, Ulrike Ziehm, Gunther Jansen. Reliability of algorithmic somatic copy number alteration detection from targeted capture data
2799 -- 2807Zaixiang Tang, Yueping Shen, Xinyan Zhang, Nengjun Yi. The spike-and-slab lasso Cox model for survival prediction and associated genes detection
2808 -- 2817Ferdinando Montecuollo, Giovannni Schmid, Roberto Tagliaferri. E2FM: an encrypted and compressed full-text index for collections of genomic sequences
2818 -- 2828Burçak Otlu, Can Firtina, Sündüz Keles, Oznur Tastan. GLANET: genomic loci annotation and enrichment tool
2829 -- 2836Xiong Li. A fast and exhaustive method for heterogeneity and epistasis analysis based on multi-objective optimization
2837 -- 2841Loris Nanni, Sheryl Brahnam. Multi-label classifier based on histogram of gradients for predicting the anatomical therapeutic chemical class/classes of a given compound
2842 -- 2849Rhys Heffernan, Yuedong Yang, Kuldip K. Paliwal, Yaoqi Zhou. Capturing non-local interactions by long short-term memory bidirectional recurrent neural networks for improving prediction of protein secondary structure, backbone angles, contact numbers and solvent accessibility
2850 -- 2858Stefan Hammer, Birgit Tschiatschek, Christoph Flamm, Ivo L. Hofacker, Sven Findeiß. RNAblueprint: flexible multiple target nucleic acid sequence design
2859 -- 2866Mirco Michel, Marcin J. Skwark, David Menéndez Hurtado, Magnus Ekeberg, Arne Elofsson. Predicting accurate contacts in thousands of Pfam domain families using PconsC3
2867 -- 2872Bahjat F. Qaqish, Jonathon J. O'Brien, Jonathan C. Hibbard, Katie J. Clowers. Accelerating high-dimensional clustering with lossless data reduction
2873 -- 2881Jian Xiao, Hongyuan Cao, Jun Chen. False discovery rate control incorporating phylogenetic tree increases detection power in microbiome-wide multiple testing
2882 -- 2889Mingwei Dai, Jingsi Ming, Mingxuan Cai, Jin Liu, Can Yang, Xiang Wan, ZongBen Xu. IGESS: a statistical approach to integrating individual-level genotype data and summary statistics in genome-wide association studies
2890 -- 2896Nicolas Städler, Frank Dondelinger, Steven M. Hill, Rehan Akbani, Yiling Lu, Gordon B. Mills, Sach Mukherjee. Molecular heterogeneity at the network level: high-dimensional testing, clustering and a TCGA case study
2897 -- 2905Kristen A. Severson, Brinda Monian, J. Christopher Love, Richard D. Braatz. A method for learning a sparse classifier in the presence of missing data for high-dimensional biological datasets
2906 -- 2913Trang T. Le, W. Kyle Simmons, Masaya Misaki, Jerzy Bodurka, Bill C. White, Jonathan Savitz, Brett A. McKinney. Differential privacy-based evaporative cooling feature selection and classification with relief-F and random forests
2914 -- 2923Matthew Bernstein, AnHai Doan, Colin N. Dewey. MetaSRA: normalized human sample-specific metadata for the Sequence Read Archive
2924 -- 2929Nili Tickotsky, Tal Sagiv, Jaime Prilusky, Eric Shifrut, Nir Friedman. McPAS-TCR: a manually curated catalogue of pathology-associated T cell receptor sequences
2930 -- 2932Zhicheng Ji, Weiqiang Zhou, Hongkai Ji. Single-cell regulome data analysis by SCRAT
2933 -- 2935Alden King-Yung Leung, Nana Jin, Kevin Y. Yip, Ting-Fung Chan. OMTools: a software package for visualizing and processing optical mapping data
2936 -- 2937Byoungnam Min, Igor V. Grigoriev, In-Geol Choi. FunGAP: Fungal Genome Annotation Pipeline using evidence-based gene model evaluation
2938 -- 2940Jake R. Conway, Alexander Lex, Nils Gehlenborg. UpSetR: an R package for the visualization of intersecting sets and their properties
2941 -- 2942Johannes T. Roehr, Christoph Dieterich, Knut Reinert. Flexbar 3.0 - SIMD and multicore parallelization
2943 -- 2945Kamil Jan Cygan, Clayton Hendrick Sanford, William G. Fairbrother. Spliceman2: a computational web server that predicts defects in pre-mRNA splicing
2946 -- 2947Lukasz Kreft, Alexander Botzki, Frederik Coppens, Klaas Vandepoele, Michiel Van Bel. PhyD3: a phylogenetic tree viewer with extended phyloXML support for functional genomics data visualization
2948 -- 2950José Manuel Abuín, Tomás F. Pena, Juan Carlos Pichel. PASTASpark: multiple sequence alignment meets Big Data
2951 -- 2953Jiannong Li, Inna Smalley, Michael J. Schell, Keiran S. M. Smalley, Y. Ann Chen. SinCHet: a MATLAB toolbox for single cell heterogeneity analysis in cancer
2954 -- 2956Stian Lågstad, Sen Zhao, Andreas M. Hoff, Bjarne Johannessen, Ole Christian Lingjærde, Rolf I. Skotheim. chimeraviz: a tool for visualizing chimeric RNA
2957 -- 2959Jinghua Gu, Xuan Wang, Jinyan Chan, Nicole E. Baldwin, Jacob A. Turner. Phantom: investigating heterogeneous gene sets in time-course data
2960 -- 2962Christian Scheeder, Florian Heigwer, Michael Boutros. HTSvis: a web app for exploratory data analysis and visualization of arrayed high-throughput screens
2963 -- 2965Hyun-hwan Jeong, Seon-Young Kim, Maxime W. C. Rousseaux, Huda Y. Zoghbi, Zhandong Liu. CRISPRcloud: a secure cloud-based pipeline for CRISPR pooled screen deconvolution
2966 -- 2967Atis Elsts, Agris Pentjuss, Egils Stalidzans. SpaceScanner: COPASI wrapper for automated management of global stochastic optimization experiments
2968 -- 0Bonnie Berger, Terry Gaasterland, Thomas Lengauer, Christine A. Orengo, Bruno Gaëta, Scott Markel, Alfonso Valencia. ISCB's initial reaction to New England Journal of Medicine editorial on data sharing
2969 -- 0Alastair M. Kilpatrick. Message from the ISCB: The 5th ISCB Wikipedia competition: coming to a classroom near you?