| 2971 | -- | 2976 | Minh N. Nguyen, Mohan R. Pradhan, Chandra Verma, Pingyu Zhong. The interfacial character of antibody paratopes: analysis of antibody-antigen structures |
| 2977 | -- | 2985 | Sylvain Mareschal, Philippe Ruminy, Marion Alcantara, Céline Villenet, Martin Figeac, Sydney Dubois, Philippe Bertrand, Abdelilah Bouzelfen, Pierre-Julien Viailly, Dominique Penther, Hervé Tilly, Christian Bastard, Fabrice Jardin. Application of the cghRA framework to the genomic characterization of Diffuse Large B-Cell Lymphoma |
| 2986 | -- | 2994 | Milos Pavlovic, Pradipta Ray, Kristina Pavlovic, Aaron Kotamarti, Min Chen, Michael Q. Zhang. DIRECTION: a machine learning framework for predicting and characterizing DNA methylation and hydroxymethylation in mammalian genomes |
| 2995 | -- | 3002 | Jacquiline W. Mugo, Ephifania Geza, Joel Defo, Samar S. M. Elsheikh, Gaston K. Mazandu, Nicola J. Mulder, Emile R. Chimusa. A multi-scenario genome-wide medical population genetics simulation framework |
| 3003 | -- | 3010 | Wenxiu Ma, Lin Yang, Remo Rohs, William Stafford Noble. DNA sequence+shape kernel enables alignment-free modeling of transcription factor binding |
| 3011 | -- | 3017 | Cristian Zambrano-Vega, Antonio J. Nebro, José García-Nieto, José Francisco Aldana Montes. M2Align: parallel multiple sequence alignment with a multi-objective metaheuristic |
| 3018 | -- | 3027 | Hao Peng, Yifan Yang, Shandian Zhe, Jian Wang, Michael Gribskov, Yuan Qi. DEIsoM: a hierarchical Bayesian model for identifying differentially expressed isoforms using biological replicates |
| 3028 | -- | 3035 | Ka Chun Wong. MotifHyades: expectation maximization for de novo DNA motif pair discovery on paired sequences |
| 3036 | -- | 3042 | J. Jiménez, Stefan Doerr, G. Martínez-Rosell, A. S. Rose, Gianni De Fabritiis. DeepSite: protein-binding site predictor using 3D-convolutional neural networks |
| 3043 | -- | 3050 | Christopher W. Wood, Jack W. Heal, Andrew R. Thomson, Gail J. Bartlett, Amaurys Ávila Ibarra, R. Leo Brady, Richard B. Sessions, Derek N. Woolfson. ISAMBARD: an open-source computational environment for biomolecular analysis, modelling and design |
| 3051 | -- | 3057 | Sang-Jun Park, Jumin Lee, Dhilon S. Patel, Hongjing Ma, Hui Sun Lee, Sunhwan Jo, Wonpil Im. Glycan Reader is improved to recognize most sugar types and chemical modifications in the Protein Data Bank |
| 3058 | -- | 3064 | Dimitrios V. Vavoulis, Jenny C. Taylor, Anna Schuh. Hierarchical probabilistic models for multiple gene/variant associations based on next-generation sequencing data |
| 3065 | -- | 3071 | Alice Madonia, Cristiano Melchiorri, Simone Bonamano, Marco Marcelli, Chiara Bulfon, Filippo Castiglione, Marco Galeotti, Donatella Volpatti, Francesco Mosca, Pietro-Giorgio Tiscar, Nicla Romano. Computational modeling of immune system of the fish for a more effective vaccination in aquaculture |
| 3072 | -- | 3079 | Christoph Schmal, Jihwan Myung, Hanspeter Herzel, Grigory V. Bordyugov. Moran's I quantifies spatio-temporal pattern formation in neural imaging data |
| 3080 | -- | 3087 | Jiadong Ji, Di He, Yang Feng, Yong He, Fuzhong Xue, Lei Xie. JDINAC: joint density-based non-parametric differential interaction network analysis and classification using high-dimensional sparse omics data |
| 3088 | -- | 3090 | Bernat Gel, Eduard Serra. karyoploteR: an R/Bioconductor package to plot customizable genomes displaying arbitrary data |
| 3091 | -- | 3093 | Rallis Karamichalis, Lila Kari. MoDMaps3D: an interactive webtool for the quantification and 3D visualization of interrelationships in a dataset of DNA sequences |
| 3094 | -- | 3095 | Giorgio Gonnella, Stefan Kurtz. GfaPy: a flexible and extensible software library for handling sequence graphs in Python |
| 3096 | -- | 3097 | William L. Miller, W. David Walter. CWDPRNP: a tool for cervid prion sequence analysis in program R |
| 3098 | -- | 3100 | Max Hebditch, M. Alejandro Carballo-Amador, Spyros Charonis, Robin Curtis, Jim Warwicker. Protein-Sol: a web tool for predicting protein solubility from sequence |
| 3101 | -- | 3103 | Andrew Low, Nicolas Rodrigue, Alex Wong. COMPASS: the COMPletely Arbitrary Sequence Simulator |
| 3104 | -- | 3106 | Alexandros Armaos, Davide Cirillo, Gian Gaetano Tartaglia. omiXcore: a web server for prediction of protein interactions with large RNA |
| 3107 | -- | 3109 | Yuxuan Yuan, Philipp E. Bayer, Huey-Tyng Lee, David Edwards. runBNG: a software package for BioNano genomic analysis on the command line |
| 3110 | -- | 3112 | Preeti Bais, Sandeep Namburi, Daniel M. Gatti, Xinyu Zhang, Jeffrey H. Chuang. CloudNeo: a cloud pipeline for identifying patient-specific tumor neoantigens |
| 3113 | -- | 3114 | Clovis Galiez, Matthias Siebert, François Enault, Jonathan Vincent, Johannes Söding. WIsH: who is the host? Predicting prokaryotic hosts from metagenomic phage contigs |
| 3115 | -- | 3116 | Jochen Kruppa, Erhard van der Vries, Wendy K. Jo, Alexander Postel, Paul Becher, Albert Osterhaus, Klaus Jung. kmerPyramid: an interactive visualization tool for nucleobase and k-mer frequencies |
| 3117 | -- | 3120 | Jean-Pierre Séhi Glouzon, Jean-Pierre Perreault, Shengrui Wang. Structurexplor: a platform for the exploration of structural features of RNA secondary structures |
| 3121 | -- | 3122 | Matthew A. Wyczalkowski, Kristine M. Wylie, Song Cao, Michael D. McLellan, Jennifer Flynn, Mo Huang, Kai Ye, Xian Fan, Ken Chen, Michael C. Wendl, Li Ding. BreakPoint Surveyor: a pipeline for structural variant visualization |
| 3123 | -- | 3125 | Vincent Gardeux, Fabrice P. A. David, Adrian Shajkofci, Petra C. Schwalie, Bart Deplancke. ASAP: a web-based platform for the analysis and interactive visualization of single-cell RNA-seq data |
| 3126 | -- | 3128 | Jason T. Serviss, Jesper Gådin, Per Eriksson, Lasse Folkersen, Dan Grandér. ClusterSignificance: a bioconductor package facilitating statistical analysis of class cluster separations in dimensionality reduced data |
| 3129 | -- | 3130 | Ilya Y. Zhbannikov, Konstantin G. Arbeev, Anatoliy I. Yashin. rqt: an R package for gene-level meta-analysis |
| 3131 | -- | 3133 | Taosheng Xu, Thuc Duy Le, Lin Liu 0003, Ning Su, Rujing Wang, Bing-Yu Sun, Antonio Colaprico, Gianluca Bontempi, Jiuyong Li. CancerSubtypes: an R/Bioconductor package for molecular cancer subtype identification, validation and visualization |
| 3134 | -- | 3136 | Aditya Bharadwaj, Divit P. Singh, Anna M. Ritz, Allison N. Tegge, Christopher L. Poirel, Pavel K. Brazhnik, Neil Adames, Kurt Luther, Shiv D. Kale, Jean Peccoud, John J. Tyson, T. M. Murali. GraphSpace: stimulating interdisciplinary collaborations in network biology |
| 3137 | -- | 3139 | Joseph W. Brown, Megan Pirrung, Lee Ann McCue. FQC Dashboard: integrates FastQC results into a web-based, interactive, and extensible FASTQ quality control tool |
| 3140 | -- | 3141 | Elias Tappeiner, Francesca Finotello, Pornpimol Charoentong, Clemens Mayer, Dietmar Rieder, Zlatko Trajanoski. TIminer: NGS data mining pipeline for cancer immunology and immunotherapy |
| 3142 | -- | 3144 | Kylie A. Bemis, Olga Vitek. matter: an R package for rapid prototyping with larger-than-memory datasets on disk |
| 3145 | -- | 3147 | Chris Churas, Alex J. Perez, Hiroyuki Hakozaki, Willy Wong, David Lee, Steven Peltier, Mark H. Ellisman. Probability Map Viewer: near real-time probability map generator of serial block electron microscopy collections |
| 3148 | -- | 3150 | Emil Jørsboe, Kristian Hanghøj, Anders Albrechtsen. fastNGSadmix: admixture proportions and principal component analysis of a single NGS sample |