| 4233 | -- | 4239 | Di Ran, Shanshan Zhang, Nicholas Lytal, Lingling An. scDoc: correcting drop-out events in single-cell RNA-seq data |
| 4240 | -- | 4247 | Rohan Shah, Gabriel Keeble-Gagnère, Alex Whan. Accurate calling of homeoallelic genotypes of iSelect markers using inbred structured populations |
| 4248 | -- | 4254 | Nazia Fatima, Luis Rueda. iSOM-GSN: an integrative approach for transforming multi-omic data into gene similarity networks via self-organizing maps |
| 4255 | -- | 4262 | Si-Yi Chen, Chun-Jie Liu, Qiong Zhang, An-Yuan Guo. An ultra-sensitive T-cell receptor detection method for TCR-Seq and RNA-Seq data |
| 4263 | -- | 4268 | Zijie Shen, Quan Zou 0001. Basic polar and hydrophobic properties are the main characteristics that affect the binding of transcription factors to methylation sites |
| 4269 | -- | 4275 | Haidong Yan, Aureliano Bombarely, Song Li. DeepTE: a computational method for de novo classification of transposons with convolutional neural network |
| 4276 | -- | 4282 | Cangzhi Jia, Yue Bi, Jinxiang Chen, André Leier, Fuyi Li, Jiangning Song. PASSION: an ensemble neural network approach for identifying the binding sites of RBPs on circRNAs |
| 4283 | -- | 4290 | Jiajing Xie, Yang Xu, Haifeng Chen, Meirong Chi, Jun He, Meifeng Li, Hui Liu, Jie Xia, Qingzhou Guan, Zheng Guo 0002, Haidan Yan. Identification of population-level differentially expressed genes in one-phenotype data |
| 4291 | -- | 4295 | Philipp Angerer, David S. Fischer, Fabian J. Theis, Antonio Scialdone, Carsten Marr. Automatic identification of relevant genes from low-dimensional embeddings of single-cell RNA-seq data |
| 4296 | -- | 4300 | Maria Solovey, Antonio Scialdone. COMUNET: a tool to explore and visualize intercellular communication |
| 4301 | -- | 4308 | Stephan Seifert, Sven Gundlach, Olaf Junge, Silke Szymczak, Luigi Martelli. Integrating biological knowledge and gene expression data using pathway-guided random forests: a benchmarking study |
| 4309 | -- | 4315 | Gayathri Sambamoorthy, Karthik Raman 0002. MinReact: a systematic approach for identifying minimal metabolic networks |
| 4316 | -- | 4322 | Yifan Deng, Xinran Xu, Yang Qiu, Jingbo Xia, Wen Zhang, Shichao Liu. A multimodal deep learning framework for predicting drug-drug interaction events |
| 4323 | -- | 4330 | Cong Sun, Zhihao Yang, Leilei Su, Lei Wang, Yin Zhang 0009, Hongfei Lin, Jian Wang. Chemical-protein interaction extraction via Gaussian probability distribution and external biomedical knowledge |
| 4331 | -- | 4338 | Mei Zuo, Yang Zhang. Dataset-aware multi-task learning approaches for biomedical named entity recognition |
| 4339 | -- | 4340 | Xiaoyu Zhang, Irene M. Kaplow, Morgan Wirthlin, Tae-Yoon Park, Andreas R. Pfenning. HALPER facilitates the identification of regulatory element orthologs across species |
| 4341 | -- | 4344 | Christopher J. Neely, Elaina D. Graham, Benjamin J. Tully. MetaSanity: an integrated microbial genome evaluation and annotation pipeline |
| 4345 | -- | 4347 | Loïc Meunier, Pierre Tocquin, Luc Cornet, Damien Sirjacobs, Valérie Leclère, Maude Pupin, Philippe Jacques, Denis Baurain. Palantir: a springboard for the analysis of secondary metabolite gene clusters in large-scale genome mining projects |
| 4348 | -- | 4349 | Jett Crowdis, Meng Xiao He, Brendan Reardon, Eliezer M. Van Allen. CoMut: visualizing integrated molecular information with comutation plots |
| 4350 | -- | 4352 | Valentin Zulkower, Susan Rosser. DNA Features Viewer: a sequence annotation formatting and plotting library for Python |
| 4353 | -- | 4356 | Pushkala Jayaraman, Timothy Mosbruger, Taishan Hu, Nikolaos G. Tairis, Chao Wu, Peter M. Clark, Monica D'arcy, Deborah Ferriola, Katarzyna Mackiewicz, Xiaowu Gai, Dimitrios Monos, Mahdi Sarmady. AnthOligo: automating the design of oligonucleotides for capture/enrichment technologies |
| 4357 | -- | 4359 | Richard A. Schäfer, Steffen Lott, Jens Georg, Björn A. Grüning, Wolfgang R. Hess, Björn Voß. GLASSgo in Galaxy: high-throughput, reproducible and easy-to-integrate prediction of sRNA homologs |
| 4360 | -- | 4362 | Mayya Sedova, Lukasz Jaroszewski, Arghavan Alisoltani, Adam Godzik. Coronavirus3D: 3D structural visualization of COVID-19 genomic divergence |
| 4363 | -- | 4365 | Leslie Solorzano, Gabriele Partel, Carolina Wählby. TissUUmaps: interactive visualization of large-scale spatial gene expression and tissue morphology data |
| 4366 | -- | 4368 | Tobias Rohde, Rita Chupalov, Nicholas Shulman, Vagisha Sharma, Josh Eckels, Brian S. Pratt, Michael J. MacCoss, Brendan MacLean. Audit logs to enforce document integrity in Skyline and Panorama |
| 4369 | -- | 4371 | Andrew Whalen, Gregor Gorjanc, John M. Hickey. AlphaFamImpute: high-accuracy imputation in full-sib families from genotype-by-sequencing data |
| 4372 | -- | 4373 | James P. Roney, Jeremy Ferlic, Franziska Michor, Thomas O. McDonald. ESTIpop: a computational tool to simulate and estimate parameters for continuous-time Markov branching processes |
| 4374 | -- | 4376 | Ninon Mounier, Zoltán Kutalik. bGWAS: an R package to perform Bayesian genome wide association studies |
| 4377 | -- | 4378 | Giuseppe Agapito, Chiara Pastrello, Pietro Hiram Guzzi, Igor Jurisica, Mario Cannataro. BioPAX-Parser: parsing and enrichment analysis of BioPAX pathways |
| 4379 | -- | 4381 | Florence Jornod, Marylène Rugard, Luc Tamisier, Xavier Coumoul, Helle R. Andersen, Robert Barouki, Karine Audouze. AOP4EUpest: mapping of pesticides in adverse outcome pathways using a text mining tool |