Journal: Bioinformatics

Volume 36, Issue 17

4535 -- 4543Viivi Halla-aho, Harri Lähdesmäki. LuxUS: DNA methylation analysis using generalized linear mixed model with spatial correlation
4544 -- 4550Divya Sharma, Andrew D. Paterson, Wei Xu. TaxoNN: ensemble of neural networks on stratified microbiome data for disease prediction
4551 -- 4559Rongshan Yu, Wenxian Yang. ScaleQC: a scalable lossy to lossless solution for NGS data compression
4560 -- 4567Mikhail D. Magnitov, Veronika S. Kuznetsova, Sergey V. Ulianov, Sergey V. Razin, Alexander V. Tyakht. Benchmark of software tools for prokaryotic chromosomal interaction domain identification
4568 -- 4575Lolita Lecompte, Pierre Peterlongo, Dominique Lavenier, Claire Lemaitre. SVJedi: genotyping structural variations with long reads
4576 -- 4582Yaobin Ke, Jiahua Rao, Huiying Zhao, Yutong Lu, Nong Xiao, Yuedong Yang. Accurate prediction of genome-wide RNA secondary structure profile based on extreme gradient boosting
4583 -- 4589Safyan Aman Memon, Kinaan Aamir Khan, Hammad Naveed. HECNet: a hierarchical approach to enzyme function classification using a Siamese Triplet Network
4590 -- 4598Robert Page, Ruriko Yoshida, Leon Zhang. Tropical principal component analysis on the space of phylogenetic trees
4599 -- 4608Mostofa Rafid Uddin, Sazan Mahbub, Mohammad Saifur Rahman, Md. Shamsuzzoha Bayzid. SAINT: self-attention augmented inception-inside-inception network improves protein secondary structure prediction
4609 -- 4615Garrett Jenkinson, Yang I Li, Shubham Basu, Margot A. Cousin, Gavin R. Oliver, Eric W. Klee. LeafCutterMD: an algorithm for outlier splicing detection in rare diseases
4616 -- 4625Theodoulos Rodosthenous, Vahid Shahrezaei, Marina Evangelou. Integrating multi-OMICS data through sparse canonical correlation analysis for the prediction of complex traits: a comparison study
4626 -- 4632Yonglin Peng, Meng Yuan, Juncai Xin, Xinhua Liu, Ju Wang 0007. Screening novel drug candidates for Alzheimer's disease by an integrated network and transcriptome analysis
4633 -- 4642Karim Abbasi, Parvin Razzaghi, Antti Poso, Massoud Amanlou, Jahan B. Ghasemi, Ali Masoudi-Nejad. DeepCDA: deep cross-domain compound-protein affinity prediction through LSTM and convolutional neural networks
4649 -- 4654Mihai Glont, Chinmay Arankalle, Krishan K. Tiwari, Tung V. N. Nguyen, Henning Hermjakob, Rahuman S. Malik-Sheriff. BioModels Parameters: a treasure trove of parameter values from published systems biology models
4655 -- 4657Marianne L. Slaten, Yen On Chan, Vivek Shrestha, Alexander E. Lipka, Ruthie Angelovici. HAPPI GWAS: Holistic Analysis with Pre- and Post-Integration GWAS
4658 -- 4659César Piñeiro, José Manuel Abuín, Juan Carlos Pichel. Very Fast Tree: speeding up the estimation of phylogenies for large alignments through parallelization and vectorization strategies
4660 -- 4661Milosz Wieczór, Adam Hospital, Genis Bayarri, Jacek Czub, Modesto Orozco. Molywood: streamlining the design and rendering of molecular movies
4662 -- 4663Colin Farrell, Sagi Snir, Matteo Pellegrini. The Epigenetic Pacemaker: modeling epigenetic states under an evolutionary framework
4664 -- 4667Erika Gardini, Federico M. Giorgi, Sergio Decherchi, Andrea Cavalli. Spathial: an R package for the evolutionary analysis of biological data
4668 -- 4670Tim Scherr, Karolin Streule, Andreas Bartschat, Moritz Böhland, Johannes Stegmaier, Markus Reischl, Véronique Orian-Rousseau, Ralf Mikut. BeadNet: deep learning-based bead detection and counting in low-resolution microscopy images
4671 -- 4672Alex J. Cornish, Daniel Chubb, Anna Frangou, Phuc H. Hoang, Martin Kaiser, David C. Wedge, Richard S. Houlston. Reference bias in the Illumina Isaac aligner
4673 -- 0Clemens Kreutz, Nilay S. Can, Ralf Schulze Bruening, Rabea Meyberg, Zsuzsanna Mérai, Noé Fernández-Pozo, Stefan A. Rensing. A Blind and Independent Benchmark Study for Detecting Differentially Methylated Regions in Plants
4674 -- 0Ataberk Donmez, Ahmet Süreyya Rifaioglu, Aybar C. Acar, Tunca Dogan, Rengül Çetin-Atalay, Volkan Atalay. iBioProVis: interactive visualization and analysis of compound bioactivity space