Journal: Bioinformatics

Volume 5, Issue 4

263 -- 269E. Hamori, G. Varga, J. J. LaGuardia. HYLAS: program for generating H curves (abstract three-dimensional representations of long DNA sequences)
271 -- 278A. Galat. Analysis of dynamics trajectories of DNA and DNA-drug complexes
279 -- 286A. Galat. CORGEN: a FORTRAN-77 generator of standard and non-standard DNA helices from the sequence
287 -- 292Jean Thioulouse. Statistical analysis and graphical display of multivariate data on the Macintosh
293 -- 298Rodger Staden. Methods for discovering novel motifs in nucleic acid sequences
299 -- 303Antonio Facchiano, Francesco Facchiano, R. Ragone, Giovanni Colonna. FAST (Flexible Analysis by Software Tool) and CHAMP (CHemico-physical AMinoacidic Parameter data bank): a new tool to investigate protein structure
305 -- 312J. Bermudez, D. Lopez, J. Valls, J. Wagensberg. On the analysis of microbiological processes by Monte Carlo simulation techniques
313 -- 317G. J. King. ELBAMAP: software for management of electrophoresis banding patterns
319 -- 320S. Pascarella, F. Bossa. PRONET: a microcomputer program for predicting the secondary structure of proteins with a neural network
321 -- 322A. Roy, T. K. Roy. A database management system for recombinant DNA clones and hosts for use in IBM personal computers
323 -- 0Kenneth Andrew Sikaris, E. Minasian, Simon Joshua Leach, R. Flegg. Computer program designed to predict and plot the secondary structure of proteins

Volume 5, Issue 3

183 -- 189E. B. Moser. Exploring contingency tables with correspondence analysis
191 -- 198M. P. Weiner, Harold A. Scheraga. A set of Macintosh computer programs for the design and analysis of synthetic genes
199 -- 204J. Vu Tien Khang. A FORTRAN subroutine to compute inbreeding and kinship coefficients according to the number of ancestral generations
205 -- 210Shu-Yun Le, J. Owens, Ruth Nussinov, Jih-H. Chen, Bruce A. Shapiro, Jacob V. Maizel. RNA secondary structures: comparison and determination of frequently recurring substructures by consensus
211 -- 218T. A. Thanaraj, Ashok S. Kolaskar, Madhusudhan W. Pandit. An extension of the graph theoretical approach to predict the secondary structure of large RNAs: the complex of 16S and 23S rRNAs from E. coli as a case study
219 -- 226Modesto Orozco, R. Franco. TEFOOL/2: a program for theoretical drug design on microcomputers
235 -- 236R. Dannenfelser, Samuel H. Yalkowsky. Database for aqueous solubility of nonelectrolytes
239 -- 240J. Marszalek, J. Kostrowicki, J. Spychala. LEHM: a convenient non-linear regression microcomputer program for fitting Michaelis-Menten and Hill models to enzyme kinetic data
241 -- 242Modesto Orozco, F. Javier Luque. POEAMS: program for outliers elimination in anomalous multidimensional space
245 -- 0A. Suitsu, R. Vilu, U. Jarv. Programs for reference library managing

Volume 5, Issue 2

89 -- 96Rodger Staden. Methods for calculating the probabilities of finding patterns in sequences
97 -- 100G. Mengeritsky, Temple F. Smith. New analytical tool for analysis of splice site sequence determinants
101 -- 106J. Sulston, F. Mallett, R. Durbin, Terry Horsnell. Image analysis of restriction enzyme fingerprint autoradiograms
107 -- 113R. Rechid, Martin Vingron, P. Argos. A new interactive protein sequence alignment program and comparison of its results with widely used algorithms
115 -- 121Martin Vingron, P. Argos. A fast and sensitive multiple sequence alignment algorithm
123 -- 131R. F. Mott, T. B. Kirkwood, R. N. Curnow. A test for the statistical significance of DNA sequence similarities for application in databank searches
133 -- 135P. M. Reid, A. E. Wilkinson, K. C. Leung, M. N. Jones. SED88: a Pascal program for the analysis of sedimentation equilibrium data
141 -- 150C. M. Henneke. A multiple sequence alignment algorithm for homologous proteins using secondary structure information and optionally keying alignments to functionally important sites
151 -- 153Desmond G. Higgins, P. M. Sharp. Fast and sensitive multiple sequence alignments on a microcomputer
155 -- 157J. E. Broom, P. A. Stockwell, D. F. Hill. GELENT: a sequence gel entry program for keyboard and sonic digitizer input
159 -- 160Gilbert Deléage, F. F. Clerc, B. Roux. ANTHEPROT: IBM PC and Apple Macintosh versions
161 -- 0A. Sette, L. Adorini, C. Mancini, G. Doria. A BASIC microcomputer program for data analysis of limiting dilution assays

Volume 5, Issue 1

1 -- 13T. Charles Hodgman. The elucidation of protein function by sequence motif analysis
15 -- 18R. Stulich, K. Rohde. EMBOPRO--an automatically generated protein sequence database
19 -- 26G. H. Dibdin. A simple add-on algorithm to extend one-dimensional finite difference diffusion calculations to include charge coupling
27 -- 32Panagiotis A. Tsonis, Anastasios A. Tsonis. Chaos: principles and implications in biology
33 -- 40S. Volinia, R. Gambari, F. Bernardi, Italo Barrai. The frequency of oligonucleotides in mammalian genic regions
41 -- 46S. Sjoberg, P. Carlsson, S. Enerback, G. Bjursell. A compact, flexible and cheap system for acquiring sequence data from autoradiograms with a digitizer and transferring it to an arbitrary host computer
47 -- 50José L. Oliver, A. Marin, J. R. Medina. SDSE: a software package to simulate the evolution of a pair of DNA sequences
51 -- 52W. Bains. MULTAN (2), a multiple string alignment program for nucleic acids and proteins
53 -- 54S. Pascarella, F. Bossa. CLEAVAGE: a microcomputer program for predicting signal sequence cleavage sites