| 3 | -- | 23 | Philipp Bucher, Kevin Karplus, Nicolas Moeri, Kay Hofmann. A Flexible Motif Search Technique Based on Generalized Profiles |
| 25 | -- | 33 | Michael Gribskov, Nina L. Robinson. Use of Receiver Operating Characteristic (ROC) Analysis to Evaluate Sequence Matching |
| 35 | -- | 38 | Colin Martindale, Andrzej K. Konopka. Oligonucleotide Frequencies in DNA Follow a Yule Distribution |
| 41 | -- | 48 | George I. Bell. Evolution of Simple Sequence Repeats |
| 49 | -- | 59 | Claudia Kappen. Theoretical Approaches to the Analysis of Homeobox Gene Evolution |
| 61 | -- | 65 | Christopher Wills. Improving the Analysis of Phylogenetic Data |
| 69 | -- | 83 | Christian V. Forst. Chaotic Interactions of Self-replicating RNA |
| 85 | -- | 94 | Christian Reidys, Peter F. Stadler. Bio-molecular Shapes and Algebraic Structures |
| 95 | -- | 100 | Robert Rosen. Biology and the Measurement Problem |
| 103 | -- | 118 | James W. Fickett. The Gene Identification Problem: An Overview for Developers |
| 119 | -- | 121 | Jerzy Jurka, Paul Klonowski, Vadim Dagman, Paul Pelton. Censor - a Program for Identification and Elimination of Repetitive Elements From DNA Sequences |
| 123 | -- | 133 | Jürgen Kleffe, Klaus Hermann, Mark Borodovsky. Statistical Analysis of Genemark Performance by Cross-validation |
| 135 | -- | 140 | Sherri Matis, Ying Xu, Manesh J. Shah, Xiaojun Guan, J. Ralph Einstein, Richard J. Mural, Edward C. Uberbacher. Detection of RNA Polymerase II Promoters and Polyadenylation Sites in Human DNA Sequence |
| 141 | -- | 144 | Graziano Pesole, Giorgio Grillo, Sabino Liuni. Databases of MRNA Untranslated Regions for Metazoa |