Journal: Computer Physics Communications

Volume 181, Issue 9

180 -- 0S. Nath. Erratum to TERS v2.0: An improved version of TERS [Comput. Phys. Commun
1477 -- 1489Marat Valiev, Eric J. Bylaska, N. Govind, K. Kowalski, Tjerk P. Straatsma, H. J. J. Van Dam, D. Wang, Jarek Nieplocha, Edoardo Aprà, Theresa L. Windus, Wibe A. deJong. NWChem: A comprehensive and scalable open-source solution for large scale molecular simulations
1490 -- 1500M. Honda. Simulation technique of free-boundary equilibrium evolution in plasma ramp-up phase
1501 -- 1509C. A. Duarte. Convergence and instability of iterative procedures on the one-dimensional Schrödinger-Poisson problem
1510 -- 1516Ian Mondragon-Shem, Boris A. Rodríguez, Francisco E. López. Efficient calculation of Coulomb matrix elements for bilayers of confined charge carriers with arbitrary spatial separation
1517 -- 1528Michael A. Clark, Ron Babich, Kipton Barros, Richard C. Brower, Claudio Rebbi. Solving lattice QCD systems of equations using mixed precision solvers on GPUs
1529 -- 1537Feng-Nan Hwang, Shang-Rong Cai, Yun-Long Shao, Jong-Shinn Wu. Parallel Newton-Krylov-Schwarz algorithms for the three-dimensional Poisson-Boltzmann equation in numerical simulation of colloidal particle interactions
1538 -- 1548Yonglei Fang, Qinghong Li, Xinyuan Wu. Extended RKN methods with FSAL property for oscillatory systems
1549 -- 1556Benjamin Block, Peter Virnau, Tobias Preis. Multi-GPU accelerated multi-spin Monte Carlo simulations of the 2D Ising model
1557 -- 1561Robert Hammerling, Othmar Koch, Christa Simon, Ewa Weinmüller. Numerical solution of singular ODE eigenvalue problems in electronic structure computations
1562 -- 1569R. G. M. van der Sman. MRT Lattice Boltzmann schemes for confined suspension flows
1570 -- 1583Gunnar S. Bali, Sara Collins, Andreas Schäfer. Effective noise reduction techniques for disconnected loops in Lattice QCD
1584 -- 1592G. M. Doctors, Marco D. Mazzeo, Peter V. Coveney. A computationally efficient method for simulating fluid flow in elastic pipes in three dimensions
1593 -- 1604S. Ask, I. V. Akin, L. Benucci, A. De Roeck, M. Goebel, J. Haller. Real emission and virtual exchange of gravitons and unparticles in Pythia8
1605 -- 1611Gaurav Khanna, Justin McKennon. Numerical modeling of gravitational wave sources accelerated by OpenCL
1612 -- 1622T. Binoth, F. Boudjema, G. Dissertori, A. Lazopoulos, A. Denner, S. Dittmaier, R. Frederix, N. Greiner, S. Höche, W. Giele, P. Skands, J. Winter, T. Gleisberg, J. Archibald, G. Heinrich, F. Krauss, D. Maître, M. Huber, J. Huston, N. Kauer. A proposal for a standard interface between Monte Carlo tools and one-loop programs
1623 -- 1632Andriy O. Lyakhov, Artem R. Oganov, Mario Valle. How to predict very large and complex crystal structures
1633 -- 1640Bernie D. Shizgal, Raouf Dridi. Maple code for the calculation of the matrix elements of the Boltzmann collision operators for mixtures
1641 -- 1657B. G. Carlsson, J. Dobaczewski, J. Toivanen, P. Veselý. Solution of self-consistent equations for the N:::3:::LO nuclear energy density functional in spherical symmetry. The program hosphe (v1.02)
1658 -- 0Xinyuan Wu. Erratum to Extended RKN-type methods for numerical integration of perturbed oscillators [Computer Physics Communications 180 (2009) 1777-1794]

Volume 181, Issue 8

1335 -- 1345Veerle Ledoux, Marnix Van Daele. Solving Sturm-Liouville problems by piecewise perturbation methods, revisited
1352 -- 1361Toshiaki Kaneko, Takahiro Ueda. A geometric method of sector decomposition
1362 -- 1368S. Stavroyiannis, T. E. Simos. A nonlinear explicit two-step fourth algebraic order method of order infinity for linear periodic initial value problems
1369 -- 1377Linghua Kong, Jingjing Zhang, Ying Cao, Yali Duan, Hong Huang. Semi-explicit symplectic partitioned Runge-Kutta Fourier pseudo-spectral scheme for Klein-Gordon-Schrödinger equations
1378 -- 1387Jacques Bloch, Tobias Breu, Andreas Frommer, Simon Heybrock, Katrin Schäfer, Tilo Wettig. Short-recurrence Krylov subspace methods for the overlap Dirac operator at nonzero chemical potential
1388 -- 1391Rafael B. Frigori. Universality in short-time critical gluodynamics with heat-bath-inspired algorithms
1392 -- 1401Mehrdad Lakestani, Mehdi Dehghan. Collocation and finite difference-collocation methods for the solution of nonlinear Klein-Gordon equation
1402 -- 1409Toni Giorgino, Matt J. Harvey, Gianni De Fabritiis. Distributed computing as a virtual supercomputer: Tools to run and manage large-scale BOINC simulations
1410 -- 1418Mehdi Dehghan, Arezou Ghesmati. Application of the dual reciprocity boundary integral equation technique to solve the nonlinear Klein-Gordon equation
1419 -- 1427M. Tentyukov, J. A. M. Vermaseren. The multithreaded version of FORM
1428 -- 1437M. J. Pueschel, Tilman Dannert, Frank Jenko. On the role of numerical dissipation in gyrokinetic Vlasov simulations of plasma microturbulence
1444 -- 1448S. Bianchi, R. Di Leonardo. Real-time optical micro-manipulation using optimized holograms generated on the GPU
1449 -- 1454Christoph Junghans, Simón Poblete. A reference implementation of the adaptive resolution scheme in ESPResSo
1455 -- 1463Masayuki Toyoda, Taisuke Ozaki. LIBERI: Library for numerical evaluation of electron-repulsion integrals
1464 -- 1470I. V. Grossu, C. Besliu, Al. Jipa, C. C. Bordeianu, D. Felea, E. Stan, T. Esanu. Code C# for chaos analysis of relativistic many-body systems
1471 -- 1475María Eugenia Castro, Alfonso Niño, Camelia Muñoz-Caro. Heuristic computation of the rovibrational G matrix in optimized molecule-fixed axes. Gmat 2.1

Volume 181, Issue 7

1179 -- 1185Carlo Manuali, Antonio Laganà, Sergio Rampino. GriF: A Grid framework for a Web Service approach to reactive scattering
1186 -- 1194A. V. Wolkov, N. B. Petrovskaya. Higher order discontinuous Galerkin method for acoustic pulse problem
1195 -- 1203Francisco de la Hoz, Fernando Vadillo. An integrating factor for nonlinear Dirac equations
1204 -- 1211A. D Angola, G. Coppa, Mario Capitelli, C. Gorse, Gianpiero Colonna. An efficient energy-conserving numerical model for the electron energy distribution function in the presence of electron-electron collisions
1212 -- 1217I. M. Sobol, Sergei Kucherenko. A new derivative based importance criterion for groups of variables and its link with the global sensitivity indices
1218 -- 1223F. P. Fernandes, F. W. S. Lima, J. A. Plascak. Blume-Capel model on directed and undirected small-world Voronoi-Delaunay random lattices
1224 -- 1230A. Golbabai, M. M. Arabshahi. A numerical method for diffusion-convection equation using high-order difference schemes
1231 -- 1241Yaming Chen, Huajun Zhu, Songhe Song. Multi-symplectic splitting method for the coupled nonlinear Schrödinger equation
1242 -- 1250Andrei Bourchtein, Ludmila Bourchtein. On iterated Crank-Nicolson methods for hyperbolic and parabolic equations
1251 -- 1254Th. Monovasilis, Z. Kalogiratou, Tom E. Simos. Symplectic Partitioned Runge-Kutta methods with minimal phase-lag
1255 -- 1265Mehdi Dehghan, Rezvan Salehi. Solution of a nonlinear time-delay model in biology via semi-analytical approaches
1266 -- 1274Reza Mokhtari, Maryam Mohammadi. Numerical solution of GRLW equation using Sinc-collocation method
1275 -- 1276Omar Ramadan. Addendum to: A FDTD analysis on magnetized plasma of Epstein distribution and reflection calculation [Computer Physics Communications 180 (1) (2009) 55-60]: A short comment on the equivalence of the shift-operator FDTD method and the bilinear frequency
1277 -- 1292A. Arbey, F. Mahmoudi. SuperIso Relic: A program for calculating relic density and flavor physics observables in Supersymmetry
1301 -- 1331T. Reiter. Optimising code generation with haggies
1332 -- 1333A. I. Ogoyski, S. Kawata, P. H. Popov. Code OK3 - An upgraded version of OK2 with beam wobbling function

Volume 181, Issue 6

987 -- 998Frederic Imbeaux, J. B. Lister, G. T. A. Huysmans, W. Zwingmann, M. Airaj, L. Appel, V. Basiuk, David Coster, Lars-Goran Eriksson, Bernard Guillerminet, Denis Kalupin, C. Konz, Gabriele Manduchi, M. Ottaviani, G. Pereverzev, Y. Peysson, O. Sauter, J. Signoret, Per Strand. A generic data structure for integrated modelling of tokamak physics and subsystems
999 -- 1007Hyungson Ki. Level set method for two-phase incompressible flows under magnetic fields
1021 -- 1024Changbum Chun, Rathinasamy Sakthivel. Homotopy perturbation technique for solving two-point boundary value problems - comparison with other methods
1025 -- 1036Matthew R. Smith, Fang-An Kuo, Chih-Wei Hsieh, Jen-Perng Yu, Jong-Shinn Wu, Alex Ferguson. Rapid optimization of blast wave mitigation strategies using Quiet Direct Simulation and Genetic Algorithm
1037 -- 1046Seong-Deog Yang, Hyun Geun Lee, Junseok Kim. A phase-field approach for minimizing the area of triply periodic surfaces with volume constraint
1047 -- 1050Minghui Wang. Algorithm Q-LSQR for the least squares problem in quaternionic quantum theory
1057 -- 1068Constantine Bekas, Alessandro Curioni. Very large scale wavefunction orthogonalization in Density Functional Theory electronic structure calculations
1069 -- 1076S. Satake, Y. Idomura, H. Sugama, T.-H. Watanabe. Benchmark test of drift-kinetic and gyrokinetic codes through neoclassical transport simulations
1077 -- 1086Florian Staub. From superpotential to model files for FeynArts and CalcHep/CompHep
1096 -- 1108K. Parand, Mehdi Dehghan, A. R. Rezaei, S. M. Ghaderi. An approximation algorithm for the solution of the nonlinear Lane-Emden type equations arising in astrophysics using Hermite functions collocation method
1109 -- 1122Shamsul Qamar, Sidrah Mudasser. A kinetic flux-vector splitting method for the shallow water magnetohydrodynamics
1123 -- 1135A. R. Samana, F. Krmpotic, C. A. Bertulani. QRAP: A numerical code for projected (Q)uasiparticle (RA)ndom (P)hase approximation
1144 -- 1149Chao-Hsi Chang, Jian-xiong Wang, Xing-Gang Wu. GENXICC2.0: An upgraded version of the generator for hadronic production of double heavy baryons Xi::cc::, Xi::bc:: and Xi::bb::
1150 -- 1160Benzhuo Lu, Xiaolin Cheng, Jingfang Huang, James Andrew McCammon. AFMPB: An adaptive fast multipole Poisson-Boltzmann solver for calculating electrostatics in biomolecular systems
1161 -- 1166C. Carasco. MCNP Output Data Analysis with ROOT (MODAR)

Volume 181, Issue 5

181 -- 0David Eriksson, Johan Rathsman, Oscar Stål. Erratum for 2HDMC - two-Higgs-doublet model calculator [Comput. Phys. Commun
837 -- 841E. T. Meier, V. S. Lukin, U. Shumlak. Spectral element spatial discretization error in solving highly anisotropic heat conduction equation
842 -- 847N. Mohankumar, A. Natarajan. On an interesting variant of the IMT quadrature
848 -- 854Bongsoo Jang. Solving linear and nonlinear initial value problems by the projected differential transform method
855 -- 860Ivan Duchemin, François Gygi. A scalable and accurate algorithm for the computation of Hartree-Fock exchange
861 -- 868Zhen F. Tian, P. X. Yu. High-order compact ADI (HOC-ADI) method for solving unsteady 2D Schrödinger equation
869 -- 875Samuel F. Martins, Ricardo A. Fonseca, Luís O. Silva, Wei Lu, Warren B. Mori. Numerical simulations of laser wakefield accelerators in optimal Lorentz frames
876 -- 882S. M. Abrarov, Brendan M. Quine, R. K. Jagpal. High-accuracy approximation of the complex probability function by Fourier expansion of exponential multiplier
883 -- 886Hiroto Tadano, Y. Kuramashi, Tetsuya Sakurai. Application of preconditioned block BiCGGR to the Wilson-Dirac equation with multiple right-hand sides in lattice QCD
887 -- 905Marco Hülsmann, Jadran Vrabec, Astrid Maaß, Dirk Reith. Assessment of numerical optimization algorithms for the development of molecular models
906 -- 912Jani Sainio. CUDAEASY - a GPU accelerated cosmological lattice program
913 -- 920Monodeep Chakraborty, Jürgen Spitaler, Peter Puschnig, Claudia Ambrosch-Draxl. ATAT@WIEN2k: An interface for cluster expansion based on the linearized augmented planewave method
928 -- 936Panagiotis E. Hadjidoukas, C. Bousis, D. Emfietzoglou. Parallelization of a Monte Carlo particle transport simulation code
937 -- 946Jen-Hao Chen, Jinn-Liang Liu. A numerical method for exact diagonalization of semiconductor quantum dot model
947 -- 956Yongxiang Zhao, Aiguo Xiao. Variational iteration method for singular perturbation initial value problems
957 -- 966Mehrdad Lakestani, Mehdi Dehghan. Numerical solution of Riccati equation using the cubic B-spline scaling functions and Chebyshev cardinal functions
967 -- 977María Eugenia Castro, Alfonso Niño, Camelia Muñoz-Caro. A metaheuristic approach to the optimal definition of molecule-fixed axes in rovibrational Hamiltonians
978 -- 984Weiwei Cai, Laura Kranendonk, Tonghun Lee, Lin Ma. Characterization of composite nanoparticles using an improved light scattering program for coated spheres

Volume 181, Issue 4

715 -- 719B. F. Mcmillan, S. Jolliet, Alberto Bottino, P. Angelino, T. M. Tran, L. Villard. Rapid Fourier space solution of linear partial integro-differential equations in toroidal magnetic confinement geometries
720 -- 725Nobuaki Ohno, Akira Kageyama. Region-of-interest visualization by CAVE VR system with automatic control of level-of-detail
726 -- 731Wei Su, Ping Qian, Ying Liu, Jiang Shen, Nan-Xian Chen. First principle calculations of yttrium-doped palladium clusters
732 -- 745Grégory Geneste. Free energies of ferroelectric crystals from a microscopic approach
746 -- 749Björn Oetzel, Friedhelm Bechstedt, Karsten Hannewald. Finite-size modelling of electrodes for quantum transport calculations using k-space ab initio techniques
750 -- 755Joana G. Freire, Owen J. Brison, Jason A. C. Gallas. Complete sets of initial vectors for pattern growth with elementary cellular automata
756 -- 764Mathias Wagner, Andrea Walther, Bernd-Jochen Schaefer. On the efficient computation of high-order derivatives for implicitly defined functions
765 -- 771Oliver Marquardt, Sixten Boeck, Christoph Freysoldt, Tilmann Hickel, Jörg Neugebauer. Plane-wave implementation of the real-space k.p formalism and continuum elasticity theory
772 -- 786Mehdi Dehghan, Arezou Ghesmati. Numerical simulation of two-dimensional sine-Gordon solitons via a local weak meshless technique based on the radial point interpolation method (RPIM)
787 -- 799Shaozhong Deng. A robust numerical method for self-polarization energy of spherical quantum dots with finite confinement barriers
800 -- 805Daniel Reith, Peter Virnau. Implementation and performance analysis of bridging Monte Carlo moves for off-lattice single chain polymers in globular states
806 -- 812T. Kunze, Sibylle Gemming, S. Numazawa, Michael Schreiber. Low-temperature modeling for degenerate and frustrated Heisenberg systems with anisotropy
813 -- 820M. F. Ciappina, T. Kirchner, M. Schulz. Monte Carlo event generators in atomic collisions: A new tool to tackle the few-body dynamics
821 -- 830Priya Sony, Alok Shukla. A general purpose Fortran 90 electronic structure program for conjugated systems using Pariser-Parr-Pople model
831 -- 832I. V. Grossu, D. Felea, C. Besliu, Al. Jipa, C. C. Bordeianu, E. Stan, T. Esanu. A new version of Visual tool for estimating the fractal dimension of images
833 -- 834David Eriksson, Johan Rathsman, Oscar Stål. 2HDMC - two-Higgs-doublet model calculator
835 -- 836M. Bazzotti, G. Carminati, A. Margiotta, M. Spurio. An update of the generator of atmospheric muons from parametric formulas (MUPAGE)

Volume 181, Issue 3

455 -- 461Xiao-Gang Wang, Tucker Carrington Jr.. Parallel methods for high-dimensional quantum dynamics
462 -- 472Simone Melchionna, Massimo Bernaschi, Sauro Succi, Efthimios Kaxiras, Frank J. Rybicki, Dimitris Mitsouras, Ahmet U. Coskun, Charles L. Feldman. Hydrokinetic approach to large-scale cardiovascular blood flow
473 -- 480Zhen-Ting Huang, Huan-Chun Hsu, Chau-Lyan Chang, Chin-Tien Wu, T. F. Jiang. Momentum-time flux conservation method for one-dimensional wave equations
481 -- 488Sitao Ling, Minghui Wang, Musheng Wei. Hermitian tridiagonal solution with the least norm to quaternionic least squares problem
499 -- 513Marco Hülsmann, Thorsten Köddermann, Jadran Vrabec, Dirk Reith. GROW: A gradient-based optimization workflow for the automated development of molecular models
532 -- 549M. Antuono, Andrea Colagrossi, S. Marrone, Diego Molteni. Free-surface flows solved by means of SPH schemes with numerical diffusive terms
550 -- 556Jian-You Guo, Miao Yu, Jing Wang, Bao-Mei Yao, Peng Jiao. A relativistic extension of the complex scaling method using oscillator basis functions
557 -- 561Wei Jiang, Yingzhen Lin. Approximate solution of the fractional advection-dispersion equation
562 -- 568O. T. Kosmas, D. S. Vlachos. Phase-fitted discrete Lagrangian integrators
569 -- 581M. D. Mazzeo, M. Ricci, C. Zannoni. The Linked Neighbour List (LNL) method for fast off-lattice Monte Carlo simulations of fluids
626 -- 638Emmanuel Lorin, André D. Bandrauk. Multiresolution scheme for Time-Dependent Schrödinger Equation
639 -- 650Yonglei Fang, Qinghe Ming, Xinyuan Wu. Extended RKN-type methods with minimal dispersion error for perturbed oscillators
651 -- 662Moritz Riede, Rico Schueppel, Kristian O. Sylvester-Hvid, Martin Kühne, Michael C. Röttger, Klaus Zimmermann, Andreas W. Liehr. On the communication of scientific data: The Full-Metadata Format
663 -- 670Miglena N. Koleva, Lubin G. Vulkov. Two-grid quasilinearization approach to ODEs with applications to model problems in physics and mechanics
671 -- 675R. Yu, J. Zhu, H. Q. Ye. Calculations of single-crystal elastic constants made simple
676 -- 682T. C. Petersen, S. P. Ringer. An electron tomography algorithm for reconstructing 3D morphology using surface tangents of projected scattering interfaces
683 -- 686J. Lundberg, J. Conrad, W. Rolke, A. Lopez. Limits, discovery and cut optimization for a Poisson process with uncertainty in background and signal efficiency: TRolke 2.0
687 -- 702Ardavan F. Oskooi, David Roundy, Mihai Ibanescu, Peter Bermel, J. D. Joannopoulos, Steven G. Johnson. Meep: A flexible free-software package for electromagnetic simulations by the FDTD method
703 -- 0Thomas Müller, Frank Grave. An updated version of the Motion4D-library
704 -- 0Jaromir Tosiek. The Fedosov *-product in Mathematica
705 -- 706Georg M. von Hippel. TaylUR 3, a multivariate arbitrary-order automatic differentiation package for Fortran 95
707 -- 708Andrzej Daniluk. Model-Driven Development for scientific computing. Computations of RHEED intensities for a disordered surface. Part I
709 -- 710Andrzej Daniluk. Model-Driven Development for scientific computing. Computations of RHEED intensities for a disordered surface. Part II
711 -- 713Sean McConnell, Stephan Fritzsche, Andrey Surzhykov. DIRAC: A new version of computer algebra tools for studying the properties and behavior of hydrogen-like ions

Volume 181, Issue 2

247 -- 258Thomas Unfer, Jean-Pierre Boeuf, François Rogier, Frédéric Thivet. Multi-scale gas discharge simulations using asynchronous adaptive mesh refinement
259 -- 270Andrea Saltelli, Paola Annoni, Ivano Azzini, Francesca Campolongo, Marco Ratto, Stefano Tarantola. Variance based sensitivity analysis of model output. Design and estimator for the total sensitivity index
271 -- 276Liang Li, Ting-Zhu Huang, Yan-Fei Jing, Yong Zhang. Application of the incomplete Cholesky factorization preconditioned Krylov subspace method to the vector finite element method for 3-D electromagnetic scattering problems
277 -- 282Masayuki Toyoda, Taisuke Ozaki. Fast spherical Bessel transform via fast Fourier transform and recurrence formula
283 -- 300Eladio Gutiérrez, Sergio Romero, María A. Trenas, Emilio L. Zapata. Quantum computer simulation using the CUDA programming model
301 -- 304Duo Sun, Rui Jiang, Bing-Hong Wang. Timing of traffic lights and phase separation in two-dimensional traffic flow
305 -- 312A. Andonov, A. Arbuzov, D. Bardin, S. Bondarenko, P. Christova, L. Kalinovskaya, V. Kolesnikov, R. Sadykov. Standard SANC modules
313 -- 316Ji Qiang. A high-order fast method for computing convolution integral with smooth kernel
317 -- 324Cheng-shi Liu. Applications of complete discrimination system for polynomial for classifications of traveling wave solutions to nonlinear differential equations
325 -- 340Hanquan Wang. An efficient Chebyshev-Tau spectral method for Ginzburg-Landau-Schrödinger equations
341 -- 354David W. Holmes, John R. Williams, Peter Tilke. An events based algorithm for distributing concurrent tasks on multi-core architectures
355 -- 370Marco D. Mazzeo, Steven Manos, Peter V. Coveney. In situ ray tracing and computational steering for interactive blood flow simulation
371 -- 379Predrag Lazic, Nicolae Atodiresei, Mojtaba Alaei, Vasile Caciuc, Stefan Blügel, Radovan Brako. JuNoLo - Jülich nonlocal code for parallel post-processing evaluation of vdW-DF correlation energy
380 -- 392Matías Tueros, Sergio Sciutto. TIERRAS: A package to simulate high energy cosmic ray showers underground, underwater and under-ice
393 -- 412S. Jadach, W. Placzek, M. Skrzypek, P. Stoklosa. Markovian Monte Carlo program EvolFMC v.2 for solving QCD evolution equations
413 -- 419Thomas Müller, Frank Grave. GeodesicViewer - A tool for exploring geodesics in the theory of relativity
420 -- 425D. Germanas, R. K. Kalinauskas, S. Mickevicius. Calculation of four-particle harmonic-oscillator transformation brackets
426 -- 439A. Borgoo, O. Scharf, Gediminas Gaigalas, Michel R. Godefroid. Multiconfiguration electron density function for the ATSP2K-package
440 -- 453T. Radtke, S. Fritzsche. Simulation of n-qubit quantum systems. V. Quantum measurements

Volume 181, Issue 12

1929 -- 1940E. Ramos, J. E. Roman, S. Cardona-Serra, J. M. Clemente-Juan. Parallel implementation of the MAGPACK package for the analysis of high-nuclearity spin clusters
1941 -- 1946R. Pittau. Testing and improving the numerical accuracy of the NLO predictions
1947 -- 1954Akbar Mohebbi, Mehdi Dehghan. High-order scheme for determination of a control parameter in an inverse problem from the over-specified data
1955 -- 1962Xinyuan Wu, Bin Wang. Multidimensional adapted Runge-Kutta-Nyström methods for oscillatory systems
1963 -- 1973Jorge Francés, Cristian Neipp, Manuel Pérez-Molina, Augusto Beléndez. Rigorous interference and diffraction analysis of diffractive optic elements using the finite-difference time-domain method
1974 -- 1981Weiwei Cai, Lin Ma. Comparison of approaches based on optimization and algebraic iteration for binary tomography
1986 -- 1989Nobuyuki Masuda, Takashige Sugie, Tomoyoshi Ito, Shinjiro Tanaka, Yu Hamada, Shin-ichi Satake, Tomoaki Kunugi, Kazuho Sato. Special purpose computer system with highly parallel pipelines for flow visualization using holography technology
1990 -- 2000Ali Shokri, Mehdi Dehghan. A Not-a-Knot meshless method using radial basis functions and predictor-corrector scheme to the numerical solution of improved Boussinesq equation
2001 -- 2007J. Ambia-Garrido, Arnold Vainrub, B. Montgomery Pettitt. A model for structure and thermodynamics of ssDNA and dsDNA near a surface: A coarse grained approach
2008 -- 2023Emily M. Ryan, Alexandre M. Tartakovsky, Cristina H. Amon. A novel method for modeling Neumann and Robin boundary conditions in smoothed particle hydrodynamics
2024 -- 2034Ji Qiang, Xiaoye Li. Particle-field decomposition and domain decomposition in parallel particle-in-cell beam dynamics simulation
2035 -- 2043Magdalena Mierzwiczak, Jan Adam Kolodziej. Application of the method of fundamental solutions and radial basis functions for inverse transient heat source problem
2044 -- 2056M. Calvo, J. M. Franco, J. I. Montijano, L. Rández. Symmetric and symplectic exponentially fitted Runge-Kutta methods of high order
2057 -- 2062Tian Qiu, Tarik Hadzibeganovic, Guang Chen, Li-Xin Zhong, Xiao-Run Wu. Cooperation in the snowdrift game on directed small-world networks under self-questioning and noisy conditions
2063 -- 2071Spencer E. Olson, Andrew J. Christlieb, Fredrik K. Fatemi. PID feedback for load-balanced parallel gridless DSMC
2072 -- 2081Edoardo Patelli, Helmut J. Pradlwarter, Gerhart I. Schuëller. Global sensitivity of structural variability by random sampling
2082 -- 2085William J. Menz, Matthew J. Penna, Mark J. Biggs. TNAMD: Implementation of TIGER2 in NAMD
2086 -- 2090Min Hyung Cho, Wei Cai. A Wideband Fast Multipole Method for the two-dimensional complex Helmholtz equation
2091 -- 2097Barry I. Schneider, Javier Segura, Amparo Gil, Xiaoxu Guan, Klaus Bartschat. A new Fortran 90 program to compute regular and irregular associated Legendre functions
2098 -- 2101Liang-You Peng, Qihuang Gong. An accurate Fortran code for computing hydrogenic continuum wave functions at a wide range of parameters
2102 -- 2115Arnaud Marmier, Zoe A. D. Lethbridge, Richard I. Walton, Christopher W. Smith, Stephen C. Parker, Kenneth E. Evans. ElAM: A computer program for the analysis and representation of anisotropic elastic properties
2116 -- 2125Ján Busa, Shura Hayryan, Chin-Kun Hu, Jaroslav Skrivánek, Ming-Chya Wu. CAVE: A package for detection and quantitative analysis of internal cavities in a system of overlapping balls: Application to proteins
2126 -- 2139Sergio Davis, Claudia Loyola, Felipe González, Joaquín Peralta. Las Palmeras Molecular Dynamics: A flexible and modular molecular dynamics code
2140 -- 2148Jesse Noffsinger, Feliciano Giustino, Brad D. Malone, Cheol-Hwan Park, Steven G. Louie, Marvin L. Cohen. EPW: A program for calculating the electron-phonon coupling using maximally localized Wannier functions
2149 -- 2157Martin Kröger, Markus Hütter. Automated symbolic calculations in nonequilibrium thermodynamics
2158 -- 2163G. von Winckel, Alfio Borzì. QUCON: A fast Krylov-Newton code for dipole quantum control problems
2164 -- 2179Scott Rostrup, Hans De Sterck. Parallel hyperbolic PDE simulation on clusters: Cell versus GPU
2180 -- 2205J. Rosiek, P. H. Chankowski, A. Dedes, S. Jäger, P. Tanedo. SUSY_FLAVOR: A computational tool for FCNC and CP-violating processes in the MSSM
2206 -- 2207Bo Zhang, Jingfang Huang, Nikos Pitsianis, Xiaobai Sun. Revision of FMM-Yukawa: An adaptive fast multipole method for screened Coulomb interactions
2208 -- 2209Linda Hung, Chen Huang, Ilgyou Shin, Gregory S. Ho, Vincent L. Lignères, Emily A. Carter. Introducing PROFESS 2.0: A parallelized, fully linear scaling program for orbital-free density functional theory calculations
2210 -- 2211C. Carasco. MCNP output data analysis with ROOT (MODAR)
2212 -- 2213Peter Koval, J. D. Talman. Update of spherical Bessel transform: FFTW and OpenMP

Volume 181, Issue 11

1821 -- 1832James Tickner. Monte Carlo simulation of X-ray and gamma-ray photon transport on a graphics-processing unit
1833 -- 1841Higinio Ramos, Cesáreo Lorenzo. Review of explicit Falkner methods and its modifications for solving special second-order I.V.P.s
1842 -- 1849Jorge Eduardo Macías-Díaz. On the simulation of the energy transmission in the forbidden band-gap of a spatially discrete double sine-Gordon system
1850 -- 1858Xiaofan Li, Tong Zhu, Meigen Zhang, Guihua Long. Seismic scalar wave equation with variable coefficients modeling by a new convolutional differentiator
1859 -- 1861N. Mohankumar, Tucker Carrington Jr.. A new approach for determining the time step when propagating with the Lanczos algorithm
1862 -- 1867Marc Torrent, N. A. W. Holzwarth, François Jollet, David Harris, Nicholas Lepley, Xiao Xu. Electronic structure packages: Two implementations of the projector augmented wave (PAW) formalism
1868 -- 1872R. Jalilian. Non-polynomial spline method for solving Bratu s problem
1873 -- 1887Xinyuan Wu, Xiong You, Wei Shi, Bin Wang. ERKN integrators for systems of oscillatory second-order differential equations
1888 -- 1895Jan Kunes, Ryotaro Arita, Philipp Wissgott, Alessandro Toschi, Hiroaki Ikeda, Karsten Held. Wien2wannier: From linearized augmented plane waves to maximally localized Wannier functions
1896 -- 1905Gary A. Huber, James Andrew McCammon. Browndye: A software package for Brownian dynamics
1906 -- 1910Ajay Rawat, N. Mohankumar. Milne, a routine for the numerical solution of Milne s problem
1925 -- 1926Jean Luc Lamotte, Jean Marie Chesneaux, Fabienne Jézéquel. CADNA_C: A version of CADNA for use with C or C++ programs
1927 -- 1928Fabienne Jézéquel, Jean Marie Chesneaux, Jean Luc Lamotte. A new version of the CADNA library for estimating round-off error propagation in Fortran programs

Volume 181, Issue 10

1661 -- 1670J. A. Breslau, Guo-Yong Fu. Implementation of an implicit shear Alfvén operator in the M3D code
1671 -- 1681Pablo M. Dupuy, H. F. Svendsen, Luciano E. Patruno, Hugo A. Jakobsen. Finite-difference stable stencils based on least-square quadric fitting
1682 -- 1686Wanqing Li, Tang Ying, Jian Wan, Dong-Jin Yu. Comparison research on the neighbor list algorithms: Verlet table and linked-cell
1687 -- 1696Larry A. Viehland, Yongbin Chang. Transport cross sections for collisions between particles
1697 -- 1701Jie Cheng, Yanqing Hu, Zengru Di, Ying Fan. Local adaptive mechanism and hierarchic social entropy in opinion formation on complex networks
1702 -- 1706Malgorzata J. Krawczyk. Application of the differential equations method for identifying communities in sparse networks
1707 -- 1714R. G. Edgar, M. A. Clark, K. Dale, D. A. Mitchell, S. M. Ord, R. B. Wayth, H. Pfister, L. J. Greenhill. Enabling a high throughput real time data pipeline for a large radio telescope array with GPUs
1715 -- 1726Jakub T. Moscicki, Maciej Wos, Massimo Lamanna, Philippe de Forcrand, Owe Philipsen. Lattice QCD thermodynamics on the Grid
1727 -- 1737C.-S. Chien, S.-L. Chang, Biao Wu. Two-stage continuation algorithms for Bloch waves of Bose-Einstein condensates in optical lattices
1738 -- 1742L. Gr. Ixaru. New numerical method for the eigenvalue problem of the 2D Schrödinger equation
1743 -- 1749Alexei V. Snytnikov, Vitalii A. Vshivkov, W. J. Goedheer. Adaptive mass alteration to model ion-ion recombination in a Particle-in-Cell simulation of silane radio-frequency discharges
1750 -- 1757Michael Watson, Ken-ichi Nishikawa. A method for incorporating the Kerr-Schild metric in electromagnetic particle-in-cell code
1758 -- 1768S. Belov, L. Dudko, D. Kekelidze, A. Sherstnev. HepML, an XML-based format for describing simulated data in high energy physics
1776 -- 1788Pietro Asinari. Nonlinear Boltzmann equation for the homogeneous isotropic case: Minimal deterministic Matlab program
1802 -- 1817K. Hasegawa, S. Moch, P. Uwer. AutoDipole - Automated generation of dipole subtraction terms -
1818 -- 1819S. Stamatiadis, S. C. Farantos. auto_deriv: Tool for automatic differentiation of a Fortran code

Volume 181, Issue 1

1 -- 10Vineet K. Singh, Rajesh K. Pandey, Saurabh Singh. A stable algorithm for Hankel transforms using hybrid of Block-pulse and Legendre polynomials
11 -- 16Weiwei Cai, Lin Ma. Applications of critical temperature in minimizing functions of continuous variables with simulated annealing algorithm
17 -- 20N. Mohankumar, S. Sen, R. Ramar. On the evaluation of correction terms in Gauss-Legendre quadrature
21 -- 23Marcos Amaku, P. R. Pascholati, V. R. Vanin. Decay chain differential equations: Solution through matrix algebra
24 -- 34Manuel Aldegunde, Natalia Seoane, Antonio J. García-Loureiro, Karol Kalna. Reduction of the self-forces in Monte Carlo simulations of semiconductor devices on unstructured meshes
35 -- 42M. Zacarés, Miguel Arevalillo-Herráez, S. Abraham. A group-theory method to find stationary states in nonlinear discrete symmetry systems
43 -- 51Mehdi Dehghan, Ameneh Taleei. A compact split-step finite difference method for solving the nonlinear Schrödinger equations with constant and variable coefficients
52 -- 60Liming Zhang 0003, Ali Deng, Minghong Wang, Shaoqing Yang. Numerical study of a novel MFIE formulation using monopolar RWG basis functions
61 -- 70H. Frerichs, D. Reiter, Y. Feng, D. Harting. Block-structured grids in Lagrangian 3D edge plasma transport simulations
71 -- 77Robert C. Tautz. A new simulation code for particle diffusion in anisotropic, large-scale and turbulent magnetic fields
78 -- 91J. Rashidinia, R. Mohammadi. Tension spline approach for the numerical solution of nonlinear Klein-Gordon equation
92 -- 98J. L. Movilla, J. I. Climente, J. Planelles. Dielectric polarization in axially-symmetric nanostructures: A computational approach
99 -- 104Jae-Suk Yang, Wooseop Kwak. Application of Wang-Landau sampling to a protein model using SMMP
105 -- 112F. Molnár Jr., T. Szakály, Róbert Mészáros, István Lagzi. Air pollution modelling using a Graphics Processing Unit with CUDA
113 -- 117Tetsuya Sakurai, Hiroto Tadano, Y. Kuramashi. Application of block Krylov subspace algorithms to the Wilson-Dirac equation with multiple right-hand sides in lattice QCD
118 -- 121Anna Manka-Krason, Advera Mwijage, Krzysztof Kulakowski. Clustering in random line graphs
122 -- 127M. ElKacimi, D. Goujdami, H. Przysiezniak, Peter Skands. One universal extra dimension in Pythia
128 -- 137D. Conte, E. Esposito, Beatrice Paternoster, Liviu Gr. Ixaru. Some new uses of the eta::m::(Z) functions
138 -- 167P. Bechtle, O. Brein, Sven Heinemeyer, Georg Weiglein, K. E. Williams. HiggsBounds: Confronting arbitrary Higgs sectors with exclusion bounds from LEP and the Tevatron
168 -- 182I. I. Gontchar, M. V. Chushnyakova. A C-code for the double folding interaction potential of two spherical nuclei
183 -- 188M. Januszewski, M. Kostur. Accelerating numerical solution of stochastic differential equations with CUDA
189 -- 205David Eriksson, Johan Rathsman, Oscar Stål. 2HDMC - two-Higgs-doublet model calculator
206 -- 212Evgeny Z. Liverts, Nir Barnea. The two-electron atomic systems. S-states
213 -- 226Guy Engelhard, Jonathan L. Feng, Iftah Galon, David Sanford, Felix Yu. SPICE: Simulation Package for Including Flavor in Collider Events
227 -- 231Mattias Blennow, Enrique Fernandez-Martinez. Neutrino oscillation parameter sampling with MonteCUBES
232 -- 245Benjamin C. Allanach, M. A. Bernhard. Including R-parity violation in the numerical computation of the spectrum of the minimal supersymmetric standard model: SOFTSUSY3.0