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    Journal: Genomics, Proteomics & Bioinformatics

    Volume 11, Issue 6

    335 -- 344Hoi Pang Low, Ashutosh Tiwari, Jagadeesh Janjanam, Li Qiu, Chien-I. Chang, William C. Strohsnitter, Errol R. Norwitz, Sun W. Tam, James E. Evans, Karin M. Green, Joao A. Paulo, Mats Lambe, Chung-Cheng Hsieh. Screening Preeclamptic Cord Plasma for Proteins Associated with Decreased Breast Cancer Susceptibility
    345 -- 353Luis Guillermo Leal, Álvaro L. Pérez-Quintero, Andrés Quintero, Ángela Bayona, Juan Felipe Ortiz, Anju Gangadharan, David Mackey, Camilo López, Liliana López Kleine. Identification of Immunity-related Genes in Arabidopsis and Cassava Using Genomic Data
    354 -- 367Mahmoud ElHefnawi, Bangli Soliman, Nourhan Abu-Shahba, Marwa Amer. An Integrative Meta-analysis of MicroRNAs in Hepatocellular Carcinoma
    368 -- 377Nichole Reisdorph, Robert Stearman, Katerina Kechris, Tzu Lip Phang, Richard Reisdorph, Jessica Prenni, David J. Erle, Christopher Coldren, Kevin L. Schey, Alexey I. Nesvizhskii, Marc Geraci. Hands-on Workshops as An Effective Means of Learning Advanced Technologies Including Genomics, Proteomics and Bioinformatics
    378 -- 384Laura Itzel Quintas-Granados, César López-Camarillo, Jesús Fandiño Armas, Guillermo Mendoza Hernandez, María Elizbeth Alvarez-Sánchez. Identification of the Phosphorylated Residues in TveIF5A by Mass Spectrometry
    385 -- 390Geetha Govindan, Achuthsankar S. Nair. Bagging with CTD - A Novel Signature for the Hierarchical Prediction of Secreted Protein Trafficking in Eukaryotes

    Volume 11, Issue 5

    257 -- 258Qi Zhou. Induced Pluripotent Stem Cells: Current Progress and Future Perspectives
    259 -- 263Jian Shu, Hongkui Deng. Lineage Specifiers: New Players in the Induction of Pluripotency
    264 -- 274Xiao-Bing Zhang. Cellular Reprogramming of Human Peripheral Blood Cells
    275 -- 283Wenwen Jia, Wen Chen, Jiuhong Kang. The Functions of MicroRNAs and Long Non-coding RNAs in Embryonic and Induced Pluripotent Stem Cells
    284 -- 287Yi-ye Zhou, Fanyi Zeng. Integration-free Methods for Generating Induced Pluripotent Stem Cells
    288 -- 293Menghua Wu, Guilai Chen, Baoyang Hu. Induced Pluripotency for Translational Research
    294 -- 298Xiao Lu, Tongbiao Zhao. Clinical Therapy Using iPSCs: Hopes and Challenges
    299 -- 303Chunjing Feng, Yun-Dan Jia, Xiao-yang Zhao. Pluripotency of Induced Pluripotent Stem Cells
    304 -- 311Juan Wang, Qi Gu, Jie Hao, Donghui Bai, Lei Liu, Xiaoyang Zhao, Zhonghua Liu, Liu Wang, Qi Zhou. Generation of Induced Pluripotent Stem Cells with High Efficiency from Human Umbilical Cord Blood Mononuclear Cells
    312 -- 319Guangjun Xi, Pingfang Hu, Cunye Qu, Shenfeng Qiu, Chang Tong, Qi-Long Ying. Induced Neural Stem Cells Generated from Rat Fibroblasts
    320 -- 326Minjie Zhang, Caiyun Yang, Huixian Liu, Yingli Sun. Induced Pluripotent Stem Cells Are Sensitive to DNA Damage
    327 -- 333Wenteng He, Qingran Kong, Yongqian Shi, Bingteng Xie, Mingxia Jiao, Tianqing Huang, Shimeng Guo, Kui Hu, Zhonghua Liu. Generation and Developmental Characteristics of Porcine Tetraploid Embryos and Tetraploid/diploid Chimeric Embryos

    Volume 11, Issue 4

    199 -- 206Patrick-Denis St-Coeur, Mohamed Touaibia, Miroslava Cuperlovic-Culf, Pier Jr Morin. Leveraging Metabolomics to Assess the Next Generation of Temozolomide-based Therapeutic Approaches for Glioblastomas
    207 -- 218Tristan D. McClure-Begley, Kathy L. Stone, Michael J. Marks, Sharon R. Grady, Christopher M. Colangelo, Jon M. Lindstrom, Marina R. Picciotto. Exploring the Nicotinic Acetylcholine Receptor-associated Proteome with iTRAQ and Transgenic Mice
    219 -- 229David M. Good, Anwer Mamdoh, Harshavardhan Budamgunta, Roman A. Zubarev. In silico Proteome-wide Amino aCid and Elemental Composition (PACE) Analysis of Expression Proteomics Data Provides A Fingerprint of Dominant Metabolic Processes
    230 -- 240Lei Yang, Ju Zhang, Shenyan Zhang, Weiwei Dong, Xiaomin Lou, Siqi Liu. Quantitative Evaluation of Aldo-keto Reductase Expression in Hepatocellular Carcinoma (HCC) Cell Lines
    241 -- 246Arindam Atanu Das, Om Prakash Sharma, Muthuvel Suresh Kumar, Ramadas Krishna, Premendu P. Mathur. PepBind: A Comprehensive Database and Computational Tool for Analysis of Protein-peptide Interactions
    247 -- 252Xiaoxing Wei, Xiangfeng Wang. A Computational Workflow to Identify Allele-specific Expression and Epigenetic Modification in Maize
    253 -- 256Shihua Zhang, Xiu-Jie Wang. Promote Connections of Young Computational Biologists in China

    Volume 11, Issue 3

    133 -- 134Matthew Loose, Roger Patient, Xiangdong Fang, Hongxing Lei. Gene Regulatory Networks in the Genomics Era
    135 -- 141Hongzhu Qu, Xiangdong Fang. A Brief Review on the Human Encyclopedia of DNA Elements (ENCODE) Project
    142 -- 150Chengqi Wang, Michael Q. Zhang, Zhihua Zhang. Computational Identification of Active Enhancers in Model Organisms
    151 -- 157Chad E. Grueter. Mediator Complex Dependent Regulation of Cardiac Development and Disease
    158 -- 165Yajuan Li, Xiangdong Fang, Quan-Zhen Li. Biomarker Profiling for Lupus Nephritis
    166 -- 171Jiya Sun, Yuyun Pan, Xuemei Feng, Huijuan Zhang, Yong Duan, Hongxing Lei. iBIG: An Integrative Network Tool for Supporting Human Disease Mechanism Studies
    172 -- 181Andrés Quintero, Alvaro L. Pérez-Quintero, Camilo López. Identification of ta-siRNAs and Cis-nat-siRNAs in Cassava and Their Roles in Response to Cassava Bacterial Blight
    182 -- 194Mark K. Titulaer. Candidate Biomarker Discovery for Angiogenesis by Automatic Integration of Orbitrap MS1 Spectral- and X!Tandem MS2 Sequencing Information
    195 -- 198Derek M. Bickhart, George E. Liu. Identification of Candidate Transcription Factor Binding Sites in the Cattle Genome

    Volume 11, Issue 2

    77 -- 85Ben C. Shirley, Eliseos J. Mucaki, Tyson Whitehead, Paul I. Costea, Pelin Akan, Peter K. Rogan. Interpretation, Stratification and Evidence for Sequence Variants Affecting mRNA Splicing in Complete Human Genome Sequences
    86 -- 95Dong Wang, Surendra Dasari, Matthew Chambers, Jerry D. Holman, Kan Chen, Daniel C. Liebler, Daniel J. Orton, Samuel O. Purvine, Matthew E. Monroe, Chang Y. Chung, Kristie L. Rose, David L. Tabb. Basophile: Accurate Fragment Charge State Prediction Improves Peptide Identification Rates
    96 -- 104Phuc Vinh Nguyen Lam, Radoslav Goldman, Konstantinos Karagiannis, Tejas Narsule, Vahan Simonyan, Valerii Soika, Raja Mazumder. Structure-based Comparative Analysis and Prediction of N-linked Glycosylation Sites in Evolutionarily Distant Eukaryotes
    105 -- 113Joao A. Paulo, Vivek Kadiyala, Peter A. Banks, Darwin L. Conwell, Hanno Steen. Mass Spectrometry-based Quantitative Proteomic Profiling of Human Pancreatic and Hepatic Stellate Cell Lines
    114 -- 121Konda Mani Saravanan, Samuel Selvaraj. Search and Analysis of Identical Reverse Octapeptides in Unrelated Proteins
    122 -- 126Konstantinos Karagiannis, Vahan Simonyan, Raja Mazumder. SNVDis: A Proteome-wide Analysis Service for Evaluating nsSNVs in Protein Functional Sites and Pathways
    127 -- 132Igor Chernukhin. pepgrep: A Tool for Peptide MS/MS Pattern Matching

    Volume 11, Issue 1

    1 -- 0Jun Yu. GPB at 10
    2 -- 7Tomas Lindahl. My Journey to DNA Repair
    8 -- 17Yamei Niu, Xu Zhao, Yong-Sheng Wu, Ming-Ming Li, Xiu-Jie Wang, Yun-Gui Yang. 6A) in RNA: An Old Modification with A Novel Epigenetic Function
    18 -- 28Ijeoma Uzoma, Heng Zhu. Interactome Mapping: Using Protein Microarray Technology to Reconstruct Diverse Protein Networks
    29 -- 33Xin Gao. Recent Advances in Computational Methods for Nuclear Magnetic Resonance Data Processing
    34 -- 40Fei Chen, Mengxing Dong, Meng Ge, Lingxiang Zhu, Lufeng Ren, Guocheng Liu, Rong Mu. The History and Advances of Reversible Terminators Used in New Generations of Sequencing Technology
    41 -- 55Zhang Zhang, Jun Yu. Does the Genetic Code Have A Eukaryotic Origin?
    56 -- 60Xin Zhao, Lei Li. Comparative Analysis of MicroRNA Promoters in Arabidopsis and Rice
    61 -- 65Guanghong Zuo, Zhao Xu, Bailin Hao. Shigella Strains Are Not Clones of Escherichia coli but Sister Species in the Genus Escherichia
    66 -- 71Qin Ma, Ying Xu. Global Genomic Arrangement of Bacterial Genes Is Closely Tied with the Total Transcriptional Efficiency
    72 -- 75Yuli Li, Shuhui Song, Cuiping Li, Jun Yu. MeRIP-PF: An Easy-to-use Pipeline for High-resolution Peak-finding in MeRIP-Seq Data
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