Journal: IJHPCA

Volume 36, Issue 5-6

567 -- 0. Special issue introduction
568 -- 586Kazuto Ando, Rahul Bale, Chung-Gang Li, Satoshi Matsuoka, Keiji Onishi, Makoto Tsubokura. Digital transformation of droplet/aerosol infection risk assessment realized on "Fugaku" for the fight against COVID-19
587 -- 602Andrew E. Blanchard, John Gounley, Debsindhu Bhowmik, Mayanka Chandra Shekar, Isaac Lyngaas, Shang Gao 0008, Junqi Yin, Aristeidis Tsaris, Feiyi Wang, Jens Glaser. Language models for the prediction of SARS-CoV-2 inhibitors
603 -- 623Anda Trifan, Defne Gorgun, Michael Salim, Zongyi Li, Alexander Brace, Maxim Zvyagin, Heng Ma, Austin Clyde, David Clark, David J. Hardy, Tom Burnley, Lei Huang 0019, John D. McCalpin, Murali Emani, Hyenseung Yoo, Junqi Yin, Aristeidis Tsaris, Vishal Subbiah, Tanveer Raza, Jessica Liu, Noah Trebesch, Geoffrey Wells, Venkatesh Mysore, Tom Gibbs, James C. Phillips, S. Chakra Chennubhotla, Ian T. Foster, Rick Stevens, Anima Anandkumar, Venkatram Vishwanath, John E. Stone, Emad Tajkhorshid, Sarah A Harris, Arvind Ramanathan. Intelligent resolution: Integrating Cryo-EM with AI-driven multi-resolution simulations to observe the severe acute respiratory syndrome coronavirus-2 replication-transcription machinery in action

Volume 36, Issue 4

443 -- 458Andrew T. Kassen, Varun Shankar, Aaron L. Fogelson. A fine-grained parallelization of the immersed boundary method
459 -- 474Dustin Ruda, Stefan Turek, Dirk Ribbrock, Peter Zajac. Very fast finite element Poisson solvers on lower precision accelerator hardware: A proof of concept study for Nvidia Tesla V100
475 -- 491Hiroyuki Ootomo, Rio Yokota. Recovering single precision accuracy from Tensor Cores while surpassing the FP32 theoretical peak performance
492 -- 509Arturo Vargas, Thomas M. Stitt, Kenneth Weiss 0001, Vladimir Z. Tomov, Jean-Sylvain Camier, Tzanio V. Kolev, Robert N. Rieben. Matrix-free approaches for GPU acceleration of a high-order finite element hydrodynamics application using MFEM, Umpire, and RAJA
510 -- 523R. Lily Hu, Damien Pierce, Yusef Shafi, Anudhyan Boral, Vladimir Anisimov, Sella Nevo, Yi-Fan Chen. Accelerating physics simulations with tensor processing units: An inundation modeling example
524 -- 542Marcin Rogowski, Lisandro Dalcín, Matteo Parsani, David E. Keyes. Performance analysis of relaxation Runge-Kutta methods
543 -- 563Sebastian Friedemann, Bruno Raffin. An elastic framework for ensemble-based large-scale data assimilation
564 -- 0. Corrigendum to 'Unprecedented cloud resolution in a GPU-enabled full-physics atmospheric climate simulation on OLCF's summit supercomputer'

Volume 36, Issue 3

289 -- 306Stephen Herbein, Tapasya Patki, Dong H. Ahn, Sebastian Mobo, Clark Hathaway, Silvina Caíno-Lores, James Corbett, David Domyancic, Thomas R. W. Scogland, Bronis R. de Supinski, Michela Taufer. An analytical performance model of generalized hierarchical scheduling
307 -- 319Roel Van Beeumen, Khaled Z. Ibrahim, Gregory D. Kahanamoku-Meyer, Norman Y. Yao, Chao Yang 0001. Enhancing scalability of a matrix-free eigensolver for studying many-body localization
320 -- 336Michiel Van Gendt, Tim Besard, Stefaan Vandenberghe, Bjorn De Sutter. Productively accelerating positron emission tomography image reconstruction on graphics processing units with Julia
337 -- 355Jatin Gharat, Bipin Kumar, Leena Ragha, Amit Barve, Shaik Mohammad Jeelani, John P. Clyne. Development of NCL equivalent serial and parallel python routines for meteorological data analysis
356 -- 369Adrián Pérez Diéguez, Margarita Amor, Ramón Doallo, Akira Nukada, Satoshi Matsuoka. Efficient high-precision integer multiplication on the GPU
370 -- 387Michael R. Wyatt II, Stephen Herbein, Todd Gamblin, Michela Taufer. AI4IO: A suite of AI-based tools for IO-aware scheduling
388 -- 418Heather Pacella, Alec M. Dunton, Alireza Doostan, Gianluca Iaccarino. Task-parallel in situ temporal compression of large-scale computational fluid dynamics data
419 -- 439Pablo Antonio Martínez, Biagio Peccerillo, Sandro Bartolini, José M. García 0001, Gregorio Bernabé. Performance portability in a real world application: PHAST applied to Caffe

Volume 36, Issue 2

130 -- 140John A. Taylor, Pablo Rozas Larraondo, Bronis R. de Supinski. Data-driven global weather predictions at high resolutions
141 -- 152Pascal R. Bähr, Bruno Lang, Peer Ueberholz, Marton Ady, Roberto Kersevan. Development of a hardware-accelerated simulation kernel for ultra-high vacuum with Nvidia RTX GPUs
153 -- 166Giovanni Isotton, Carlo Janna, Massimo Bernaschi. A GPU-accelerated adaptive FSAI preconditioner for massively parallel simulations
167 -- 181Zhi Yao, Revathi Jambunathan, Yadong Zeng, Andrew Nonaka. A massively parallel time-domain coupled electrodynamics-micromagnetics solver
182 -- 197Yuta Hirokawa, Atsushi Yamada, Shunsuke Yamada, Masashi Noda, Mitsuharu Uemoto, Taisuke Boku, Kazuhiro Yabana. Large-scale ab initio simulation of light-matter interaction at the atomic scale in Fugaku
198 -- 213Mojtaba Barzegari, Liesbet Geris. Highly scalable numerical simulation of coupled reaction-Diffusion systems with moving interfaces
214 -- 230Isaac Lyngaas, Matthew R. Norman, Youngsung Kim. SAM++: Porting the E3SM-MMF cloud resolving model using a C++ portability library
231 -- 250Leigh Lapworth. Parallel encryption of input and output data for HPC applications
251 -- 285Emmanuel Agullo, Mirco Altenbernd, Hartwig Anzt, Leonardo Bautista-Gomez, Tommaso Benacchio, Luca Bonaventura, Hans-Joachim Bungartz, Sanjay Chatterjee, Florina M. Ciorba, Nathan DeBardeleben, Daniel Drzisga, Sebastian Eibl, Christian Engelmann, Wilfried N. Gansterer, Luc Giraud, Dominik Göddeke, Marco Heisig, Fabienne Jézéquel, Nils Kohl, Xiaoye Sherry Li, Romain Lion, Miriam Mehl, Paul Mycek, Michael Obersteiner, Enrique S. Quintana-Ortí, Francesco Rizzi, Ulrich Rüde, Martin Schulz 0001, Fred Fung, Robert Speck, Linda Stals, Keita Teranishi, Samuel Thibault, Dominik Thönnes, Andreas Wagner, Barbara I. Wohlmuth. Resiliency in numerical algorithm design for extreme scale simulations

Volume 36, Issue 1

3 -- 4Thomas M. Evans 0001, Julia C. White. Multiphysics coupling in the Exascale computing project
5 -- 12Thomas M. Evans 0001, Andrew R. Siegel, Erik W. Draeger, Jack Deslippe, Marianne M. Francois, Timothy C. Germann, William E. Hart, Daniel F. Martin. A survey of software implementations used by application codes in the Exascale Computing Project
13 -- 39John A. Turner, James F. Belak, Nathan Barton, Matthew T. Bement, Neil N. Carlson, Robert Carson, Stephen Dewitt, Jean-Luc Fattebert, Neil Eugene Hodge, Zechariah Jibben, Wayne E. King, Lyle Levine, Christopher K. Newman, Alex Plotkowski, Balasubramaniam Radhakrishnan, Samuel Temple Reeve, Matthew Rolchigo, Adrian S. Sabau, Stuart R. Slattery, Benjamin Stump. ExaAM: Metal additive manufacturing simulation at the fidelity of the microstructure
40 -- 58Jordan M. Musser, Ann S. Almgren, William D. Fullmer, Oscar Antepara, John B. Bell, Johannes P. Blaschke, Kevin Gott, Andrew Myers, Roberto Porcù, Deepak Rangarajan, Michele Rosso, Weiqun Zhang, Madhava Syamlal. MFIX-Exa: A path toward exascale CFD-DEM simulations
59 -- 77James Austin Harris, Ran Chu, Sean M. Couch, Anshu Dubey, Eirik Endeve, Antigoni Georgiadou, Rajeev Jain, Daniel Kasen, M. Paul Laiu, O. E. Bronson Messer, Jared O'Neal, Michael A. Sandoval, Klaus Weide. Exascale models of stellar explosions: Quintessential multi-physics simulation
78 -- 92David McCallen, Houjun Tang, Suiwen Wu, Eric Eckert, Junfei Huang, N. Anders Petersson. Coupling of regional geophysics and local soil-structure models in the EQSIM fault-to-structure earthquake simulation framework
93 -- 105Matthew R. Norman, David A. Bader, Christopher Eldred, Walter M. Hannah, Benjamin R. Hillman, Christopher R. Jones, Jungmin M. Lee, L. Ruby Leung, Isaac Lyngaas, Kyle G. Pressel, Sarat Sreepathi, Mark A. Taylor, Xingqiu Yuan. Unprecedented cloud resolution in a GPU-enabled full-physics atmospheric climate simulation on OLCF's summit supercomputer
106 -- 128Eric Suchyta, Scott Klasky, Norbert Podhorszki, Matthew Wolf, Abolaji D. Adesoji, Choong-Seock Chang, Jong Choi 0001, Philip E. Davis, Julien Dominski, Stéphane Ethier, Ian T. Foster, Kai Germaschewski, Berk Geveci, Chris Harris, Kevin A. Huck, Qing Liu 0002, Jeremy Logan, Kshitij Mehta, Gabriele Merlo, Shirley V. Moore, Todd S. Munson, Manish Parashar, David Pugmire, Mark S. Shephard, Cameron W. Smith, Pradeep Subedi, Lipeng Wan, Ruonan Wang, Shuangxi Zhang. The Exascale Framework for High Fidelity coupled Simulations (EFFIS): Enabling whole device modeling in fusion science