Journal: PLoS Computational Biology

Volume 12, Issue 1

0 -- 0Jayna Raghwani, Samir Bhatt, Oliver G. Pybus. Faster Adaptation in Smaller Populations: Counterintuitive Evolution of HIV during Childhood Infection
0 -- 0Maria E. Tomasso, Micheal J. Tarver, Deepa Devarajan, Steven T. Whitten. Hydrodynamic Radii of Intrinsically Disordered Proteins Determined from Experimental Polyproline II Propensities
0 -- 0Susanne Gerber, Martina Fröhlich, Hella Lichtenberg-Fraté, Sergey Shabala, Lana Shabala, Edda Klipp. Saccharomyces cerevisiae
0 -- 0Jessica M. Conway, Alan S. Perelson. + Individuals
0 -- 0Masafumi Oizumi, Shun-ichi Amari, Toru Yanagawa, Naotaka Fujii, Naotsugu Tsuchiya. Measuring Integrated Information from the Decoding Perspective
0 -- 0Kai J. Miller, Gerwin Schalk, Dora Hermes, Jeffrey G. Ojemann, Rajesh P. N. Rao. Spontaneous Decoding of the Timing and Content of Human Object Perception from Cortical Surface Recordings Reveals Complementary Information in the Event-Related Potential and Broadband Spectral Change
0 -- 0Marco A. Deriu, Gianvito Grasso, Jack A. Tuszynski, Diego Gallo, Umberto Morbiducci, Andrea Danani. Josephin Domain Structural Conformations Explored by Metadynamics in Essential Coordinates
0 -- 0Alexandre Ismail, Vincent Leroux, Myriam Smadja, Lucie Gonzalez, Murielle Lombard, Fabien Pierrel, Caroline Mellot-Draznieks, Marc Fontecave. Coenzyme Q Biosynthesis: Evidence for a Substrate Access Channel in the FAD-Dependent Monooxygenase Coq6
0 -- 0Roland Keller, Marcus Klein, Maria Thomas, Andreas Dräger, Ute Metzger, Markus F. Templin, Thomas O. Joos, Wolfgang E. Thasler, Andreas Zell, Ulrich M. Zanger. Coordinating Role of RXRα in Downregulating Hepatic Detoxification during Inflammation Revealed by Fuzzy-Logic Modeling
0 -- 0Andrew R. Gallimore, A. Radu Aricescu, Michisuke Yuzaki, Radu Calinescu. A Computational Model for the AMPA Receptor Phosphorylation Master Switch Regulating Cerebellar Long-Term Depression
0 -- 0Keng Boon Wee, Raphael Tze Chuen Lee, Jing Lin, Zacharias Aloysius Dwi Pramono, Sebastian Maurer-Stroh. Discovery of Influenza A Virus Sequence Pairs and Their Combinations for Simultaneous Heterosubtypic Targeting that Hedge against Antiviral Resistance
0 -- 0Andrew Lonsdale, Jocelyn Sietsma Penington, Timothy Rice, Michael Walker, Harriet Dashnow. Ten Simple Rules for a Bioinformatics Journal Club
0 -- 0Srivas Chennu, Stuart O'Connor, Ram Adapa, David K. Menon, Tristan A. Bekinschtein. Brain Connectivity Dissociates Responsiveness from Drug Exposure during Propofol-Induced Transitions of Consciousness
0 -- 0Isaure Chauvot de Beauchene, Sjoerd J. de Vries, Martin Zacharias. Binding Site Identification and Flexible Docking of Single Stranded RNA to Proteins Using a Fragment-Based Approach
0 -- 0Van Ngo, Yibo Wang, Stephan Haas, Sergei Y. Noskov, Robert A. Farley. v Channels
0 -- 0Troy Day, Andrew F. Read. Does High-Dose Antimicrobial Chemotherapy Prevent the Evolution of Resistance?
0 -- 0David Lamparter, Daniel Marbach, Rico Rueedi, Zoltan Kutalik, Sven Bergmann. Fast and Rigorous Computation of Gene and Pathway Scores from SNP-Based Summary Statistics
0 -- 0Ezio Bartocci, Pietro Liò. Computational Modeling, Formal Analysis, and Tools for Systems Biology
0 -- 0Zhen Song, Alain Karma, James N. Weiss, Zhilin Qu. Long-Lasting Sparks: Multi-Metastability and Release Competition in the Calcium Release Unit Network
0 -- 0Akram Méndez, Luis Mendoza. A Network Model to Describe the Terminal Differentiation of B Cells
0 -- 0Jaline Gerardin, Caitlin A. Bever, Busiku Hamainza, John M. Miller, Philip A. Eckhoff, Edward A. Wenger. Optimal Population-Level Infection Detection Strategies for Malaria Control and Elimination in a Spatial Model of Malaria Transmission
0 -- 0Gabriel A. Al-Ghalith, Emmanuel Montassier, Henry N. Ward, Dan Knights. NINJA-OPS: Fast Accurate Marker Gene Alignment Using Concatenated Ribosomes
0 -- 0C. Brandon Ogbunugafor, C. Scott Wylie, Ibrahim Diakite, Daniel M. Weinreich, Daniel L. Hartl. Adaptive Landscape by Environment Interactions Dictate Evolutionary Dynamics in Models of Drug Resistance
0 -- 0Araks Martirosyan, Matteo Figliuzzi, Enzo Marinari, Andrea De Martino. Probing the Limits to MicroRNA-Mediated Control of Gene Expression
0 -- 0Laura Fumanelli, Marco Ajelli, Stefano Merler, Neil M. Ferguson, Simon Cauchemez. Model-Based Comprehensive Analysis of School Closure Policies for Mitigating Influenza Epidemics and Pandemics
0 -- 0Jacob G. Scott, Alexander G. Fletcher, Alexander R. A. Anderson, Philip K. Maini. Spatial Metrics of Tumour Vascular Organisation Predict Radiation Efficacy in a Computational Model
0 -- 0Michael J. Hull, Stephen R. Soffe, David J. Willshaw, Alan Roberts. Modelling Feedback Excitation, Pacemaker Properties and Sensory Switching of Electrically Coupled Brainstem Neurons Controlling Rhythmic Activity
0 -- 0Almudena Pino-Ángeles, John M. Leveritt III, Themis Lazaridis. Pore Structure and Synergy in Antimicrobial Peptides of the Magainin Family
0 -- 0John D. Blischak, Emily R. Davenport, Greg Wilson. A Quick Introduction to Version Control with Git and GitHub
0 -- 0Jennifer A. Hobbs, R. Blythe Towal, Mitra J. Z. Hartmann. Evidence for Functional Groupings of Vibrissae across the Rodent Mystacial Pad
0 -- 0Duncan K. Ralph, Frederick A. Matsen IV. Consistency of VDJ Rearrangement and Substitution Parameters Enables Accurate B Cell Receptor Sequence Annotation
0 -- 0Samira Yazdi, Matthias Stein, Fredrik Elinder, Magnus Andersson, Erik Lindahl. Shaker Voltage-Gated Potassium Channel
0 -- 0Iman Farasat, Howard M. Salis. A Biophysical Model of CRISPR/Cas9 Activity for Rational Design of Genome Editing and Gene Regulation
0 -- 0Andrea N. Kravats, Sam Tonddast-Navaei, George Stan. Coarse-Grained Simulations of Topology-Dependent Mechanisms of Protein Unfolding and Translocation Mediated by ClpY ATPase Nanomachines
0 -- 0Olga Kononova, Joost Snijder, Yaroslav Kholodov, Kenneth A. Marx, Gijs J. L. Wuite, Wouter H. Roos, Valeri Barsegov. Fluctuating Nonlinear Spring Model of Mechanical Deformation of Biological Particles
0 -- 0Fernando P. Santos, Francisco C. Santos, Jorge M. Pacheco. Social Norms of Cooperation in Small-Scale Societies
0 -- 0Juan P. Bustamante, Leandro G. Radusky, Leonardo Boechi, Dario A. Estrin, Arjen ten Have, Marcelo A. Marti. Evolutionary and Functional Relationships in the Truncated Hemoglobin Family
0 -- 0Daniel D. Seaton, Jawahar Krishnan. Model-Based Analysis of Cell Cycle Responses to Dynamically Changing Environments
0 -- 0Matthew A. Oberhardt, Raphy Zarecki, Leah Reshef, Fangfang Xia, Miquel Duran-Frigola, Rachel Schreiber, Christopher S. Henry, Nir Ben-Tal, Daniel J. Dwyer, Uri Gophna, Eytan Ruppin. coli
0 -- 0Junaid Hassan, Zhi Qu, Linda L. Bergaust, Lars R. Bakken. 2O during Denitrification Explained by Assuming Cell Diversification by Stochastic Transcription of Denitrification Genes
0 -- 0In Jun Park, Andrew M. Hein, Yuriy V. Bobkov, Matthew A. Reidenbach, Barry W. Ache, Jose C. Principe. Neurally Encoding Time for Olfactory Navigation
0 -- 0Lin Chao, Camilla Ulla Rang, Audrey Menegaz Proenca, Jasper Ubirajara Chao. Asymmetrical Damage Partitioning in Bacteria: A Model for the Evolution of Stochasticity, Determinism, and Genetic Assimilation