Sjoerd J. de Vries - researchr alias

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Viewing Publication 1 - 8 from 8

2019

DaReUS-Loop: a web server to model multiple loops in homology modelsYasaman Karami, Julien Rey, Guillaume Postic, Samuel Murail, Pierre Tufféry, Sjoerd J. de Vries. nar, 47(Webserver-Issue), 2019. [doi]

2017

Fast and accurate grid representations for atom-based docking with partner flexibilitySjoerd J. de Vries, Martin Zacharias. jcc, 38(17):1538-1546, 2017. [doi]

The pepATTRACT web server for blind, large-scale peptide-protein dockingSjoerd J. de Vries, Julien Rey, Christina E. M. Schindler, Martin Zacharias, Pierre Tufféry. nar, 45(Webserver-Issue), 2017. [doi]

2016

Binding Site Identification and Flexible Docking of Single Stranded RNA to Proteins Using a Fragment-Based ApproachIsaure Chauvot de Beauchene, Sjoerd J. de Vries, Martin Zacharias. ploscb, 12(1), 2016. [doi]

2012

Dynamic Control of Selectivity in the Ubiquitination Pathway Revealed by an ASP to GLU Substitution in an Intra-Molecular Salt-Bridge NetworkSjoerd J. L. van Wijk, Adrien S. J. Melquiond, Sjoerd J. de Vries, H. Th. Marc Timmers, Alexandre M. J. J. Bonvin. ploscb, 8(11), 2012. [doi]

2011

2006

Intramolecular surface contacts contain information about protein-protein interface regionsSjoerd J. de Vries, Alexandre M. J. J. Bonvin. bioinformatics, 22(17):2094-2098, 2006. [doi]

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