Journal: PLoS Computational Biology

Volume 12, Issue 8

0 -- 0Danika Lindsay, Colleen M. Garvey, Shannon M. Mumenthaler, Jasmine Foo. Leveraging Hypoxia-Activated Prodrugs to Prevent Drug Resistance in Solid Tumors
0 -- 0Jorge Peña 0001, Bin Wu, Jordi Arranz, Arne Traulsen. Evolutionary Games of Multiplayer Cooperation on Graphs
0 -- 0William Letsou, Long Cai. Noncommutative Biology: Sequential Regulation of Complex Networks
0 -- 0Ruben G. A. van Heck, Mathias Ganter, Vítor A. P. Martins dos Santos, Jörg Stelling. Efficient Reconstruction of Predictive Consensus Metabolic Network Models
0 -- 0Sreedhar S. Kumar, Jan Wülfing, Samora Okujeni, Joschka Boedecker, Martin A. Riedmiller, Ulrich Egert. Autonomous Optimization of Targeted Stimulation of Neuronal Networks
0 -- 0Holger Finger, Marlene Bönstrup, Bastian Cheng, Arnaud Messé, Claus C. Hilgetag, Götz Thomalla, Christian Gerloff, Peter König. Modeling of Large-Scale Functional Brain Networks Based on Structural Connectivity from DTI: Comparison with EEG Derived Phase Coupling Networks and Evaluation of Alternative Methods along the Modeling Path
0 -- 0Diego Fasoli, Anna Cattani, Stefano Panzeri. The Complexity of Dynamics in Small Neural Circuits
0 -- 0Mitchel Alioscha-Pérez, Carine Benadiba, Katty Goossens, Sandor Kasas, Giovanni Dietler, Ronnie Willaert, Hichem Sahli. A Robust Actin Filaments Image Analysis Framework
0 -- 0Marcia C. Castro, Mathieu Maheu-Giroux, Christinah Chiyaka, Burton H. Singer. Malaria Incidence Rates from Time Series of 2-Wave Panel Surveys
0 -- 0Charles Joly Beauparlant, Fabien C. Lamaze, Astrid Deschênes, Rawane Samb, Audrey Lemaçon, Pascal Belleau, Steve Bilodeau, Arnaud Droit. metagene Profiles Analyses Reveal Regulatory Element's Factor-Specific Recruitment Patterns
0 -- 0Jonas Reeb, Maximilian Hecht, Yannick Mahlich, Yana Bromberg, Burkhard Rost. Predicted Molecular Effects of Sequence Variants Link to System Level of Disease
0 -- 0Daphne Ezer, Victoria Moignard, Berthold Göttgens, Boris Adryan. Determining Physical Mechanisms of Gene Expression Regulation from Single Cell Gene Expression Data
0 -- 0Bradley Voytek. The Virtuous Cycle of a Data Ecosystem
0 -- 0Wouter Kool, Fiery Cushman, Samuel J. Gershman. When Does Model-Based Control Pay Off?
0 -- 0Christopher J. Hasson, Zhaoran Zhang, Masaki O. Abe, Dagmar Sternad. Neuromotor Noise Is Malleable by Amplifying Perceived Errors
0 -- 0Joeri B. G. van Wijngaarden, Riccardo Zucca, Simon Finnigan, Paul F. M. J. Verschure. The Impact of Cortical Lesions on Thalamo-Cortical Network Dynamics after Acute Ischaemic Stroke: A Combined Experimental and Theoretical Study
0 -- 0Jose Lugo-Martinez, Vikas Pejaver, Kymberleigh A. Pagel, Shantanu Jain, Matthew E. Mort, David N. Cooper, Sean D. Mooney, Predrag Radivojac. The Loss and Gain of Functional Amino Acid Residues Is a Common Mechanism Causing Human Inherited Disease
0 -- 0Chung-Chuan Lo, Xiao-Jing Wang. Conflict Resolution as Near-Threshold Decision-Making: A Spiking Neural Circuit Model with Two-Stage Competition for Antisaccadic Task
0 -- 0Tamra Heberling, Lisa Davis, Jakub Gedeon, Charles Morgan, Tomás Gedeon. A Mechanistic Model for Cooperative Behavior of Co-transcribing RNA Polymerases
0 -- 0Daniel M. Lombardo, Flavio H. Fenton, Sanjiv M. Narayan, Wouter-Jan Rappel. Comparison of Detailed and Simplified Models of Human Atrial Myocytes to Recapitulate Patient Specific Properties
0 -- 0Jonathan Rubin, Nachum Ulanovsky, Israel Nelken, Naftali Tishby. The Representation of Prediction Error in Auditory Cortex
0 -- 0Bo-Xue Tian, C. Dale Poulter, Matthew P. Jacobson. Defining the Product Chemical Space of Monoterpenoid Synthases
0 -- 0Jeremiah D. Wander, Devapratim Sarma, Lise A. Johnson, Eberhard E. Fetz, Rajesh P. N. Rao, Jeffrey G. Ojemann, Felix Darvas. Cortico-Cortical Interactions during Acquisition and Use of a Neuroprosthetic Skill
0 -- 0Pablo G. Cámara, Arnold J. Levine, Raúl Rabadán. Inference of Ancestral Recombination Graphs through Topological Data Analysis
0 -- 0Neta Ravid Tannenbaum, Yoram Burak. Shaping Neural Circuits by High Order Synaptic Interactions
0 -- 0Karol A. Bacik, Michael T. Schaub, Mariano Beguerisse-Díaz, Yazan N. Billeh, Mauricio Barahona. Flow-Based Network Analysis of the Caenorhabditis elegans Connectome
0 -- 0Biman Jana, José N. Onuchic. Strain Mediated Adaptation Is Key for Myosin Mechanochemistry: Discovering General Rules for Motor Activity
0 -- 0Rachel Karchin, Ruth Nussinov. Genome Landscapes of Disease: Strategies to Predict the Phenotypic Consequences of Human Germline and Somatic Variation
0 -- 0Lior Kirsch, Gal Chechik. On Expression Patterns and Developmental Origin of Human Brain Regions
0 -- 0Wanli You, Yu-ming M. Huang, Smitha Kizhake, Amarnath Natarajan, Chia-en A. Chang. Characterization of Promiscuous Binding of Phosphor Ligands to Breast-Cancer-Gene 1 (BRCA1) C-Terminal (BRCT): Molecular Dynamics, Free Energy, Entropy and Inhibitor Design
0 -- 0Fei Liu, Shao-Wu Zhang, Weifeng Guo, Ze-Gang Wei, Luonan Chen. Inference of Gene Regulatory Network Based on Local Bayesian Networks
0 -- 0Mohammad Soltani, Cesar Augusto Vargas Garcia, Duarte Antunes, Abhyudai Singh. Intercellular Variability in Protein Levels from Stochastic Expression and Noisy Cell Cycle Processes
0 -- 0Paula A. Vasquez, Yuan Jin, Erik Palmer, David Hill, M. Gregory Forest. Modeling and Simulation of Mucus Flow in Human Bronchial Epithelial Cell Cultures - Part I: Idealized Axisymmetric Swirling Flow
0 -- 0Jun Li, Jian Zhang, Jun Wang, Wenfei Li, Wei Wang. Structure Prediction of RNA Loops with a Probabilistic Approach
0 -- 0Seong-Kyun Kim, Hyoungkyu Kim, Jerald D. Kralik, Jaeseung Jeong. Vulnerability-Based Critical Neurons, Synapses, and Pathways in the Caenorhabditis elegans Connectome
0 -- 0Daniel Hartleb, Florian Jarre, Martin J. Lercher. Improved Metabolic Models for E. coli and Mycoplasma genitalium from GlobalFit, an Algorithm That Simultaneously Matches Growth and Non-Growth Data Sets
0 -- 0Brendan Chambers, Jason N. MacLean. Higher-Order Synaptic Interactions Coordinate Dynamics in Recurrent Networks
0 -- 0Ganna Rozhnova, Maarten F. Schim van der Loeff, Janneke C. M. Heijne, Mirjam E. Kretzschmar. Impact of Heterogeneity in Sexual Behavior on Effectiveness in Reducing HIV Transmission with Test-and-Treat Strategy
0 -- 0Anatoly Buchin, Sarah Rieubland, Michael Häusser, Boris S. Gutkin, Arnd Roth. Inverse Stochastic Resonance in Cerebellar Purkinje Cells
0 -- 0Ruth Merkle, Bernhard Steiert, Florian Salopiata, Sofia Depner, Andreas Raue, Nao Iwamoto, Max Schelker, Helge Hass, Marvin Wäsch, Martin E. Böhm, Oliver Mücke, Daniel B. Lipka, Christoph Plass, Wolf D. Lehmann, Clemens Kreutz, Jens Timmer, Marcel Schilling, Ursula Klingmüller. Identification of Cell Type-Specific Differences in Erythropoietin Receptor Signaling in Primary Erythroid and Lung Cancer Cells