Jose Lugo-Martinez - researchr alias

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Viewing Publication 1 - 10 from 10

2023

Special Issue Computational Network Biology: Modeling, Analysis, and Control (CNB-MAC) Workshop (2022)Hyundoo Jeong, Jose Lugo-Martinez, Anna Ritz, Yijie Wang, Chi Zhang. jcb, 30(7):737, July 2023. [doi]

A hybrid positive unlabeled learning framework for uncovering scaffolds across human proteome by measuring the propensity to drive phase separationPeiran Jiang, Ruoxi Cai, Jose Lugo-Martinez, Yaping Guo. bib, 24(2), March 2023. [doi]

2022

Integrating longitudinal clinical and microbiome data to predict growth faltering in preterm infantsJose Lugo-Martinez, Siwei Xu, Justine Levesque, Daniel Gallagher, Leslie A. Parker, Josef Neu, Christopher J. Stewart, Janet E. Berrington, Nicholas D. Embleton, Gregory Young, Katherine E. Gregory, Misty Good, Arti Tandon, David Genetti, Tracy Warren, Ziv Bar-Joseph. jbi, 128:104031, 2022. [doi]

2021

Classification in biological networks with hypergraphlet kernelsJose Lugo-Martinez, Daniel Zeiberg, Thomas Gaudelet, Noël Malod-Dognin, Natasa Przulj, Predrag Radivojac. bioinformatics, 37(7):1000-1007, 2021. [doi]

2019

Integration of Heterogeneous Experimental Data Improves Global Map of Human Protein ComplexesJose Lugo-Martinez, Jörn Dengjel, Ziv Bar-Joseph, Robert F. Murphy. bcb 2019: 144-153 [doi]

2018

Ultra High-Dimensional Nonlinear Feature Selection for Big Biological DataMakoto Yamada, Jiliang Tang, Jose Lugo-Martinez, Ermin Hodzic, Raunak Shrestha, Avishek Saha, Hua Ouyang, Dawei Yin, Hiroshi Mamitsuka, Süleyman Cenk Sahinalp, Predrag Radivojac, Filippo Menczer, Yi Chang. tkde, 30(7):1352-1365, 2018. [doi]

2016

The Loss and Gain of Functional Amino Acid Residues Is a Common Mechanism Causing Human Inherited DiseaseJose Lugo-Martinez, Vikas Pejaver, Kymberleigh A. Pagel, Shantanu Jain, Matthew E. Mort, David N. Cooper, Sean D. Mooney, Predrag Radivojac. ploscb, 12(8), 2016. [doi]

2014

Extensive Error in the Number of Genes Inferred from Draft Genome AssembliesJames F. Denton, Jose Lugo-Martinez, Abraham E. Tucker, Daniel R. Schrider, Wesley C. Warren, Matthew W. Hahn. ploscb, 10(12), 2014. [doi]

Generalized graphlet kernels for probabilistic inference in sparse graphsJose Lugo-Martinez, Predrag Radivojac. netsci, 2(2):254-276, 2014. [doi]

2010

Conservation cores: reducing the energy of mature computationsGanesh Venkatesh, Jack Sampson, Nathan Goulding, Saturnino Garcia, Vladyslav Bryksin, Jose Lugo-Martinez, Steven Swanson, Michael Bedford Taylor. asplos 2010: 205-218 [doi]

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