Journal: PLoS Computational Biology

Volume 13, Issue 4

0 -- 0David J. Albers, Matthew E. Levine, Bruce J. Gluckman, Henry N. Ginsberg, George Hripcsak, Lena Mamykina. Personalized glucose forecasting for type 2 diabetes using data assimilation
0 -- 0Andrea K. Barreiro, Cheng Ly. When do correlations increase with firing rates in recurrent networks?
0 -- 0Charles K. Fisher, Thierry Mora, Aleksandra M. Walczak. Variable habitat conditions drive species covariation in the human microbiota
0 -- 0Joel Zylberberg, Alexandre Pouget, Peter E. Latham, Eric Shea-Brown. Robust information propagation through noisy neural circuits
0 -- 0Kostas Kouvaris, Jeff Clune, Loizos Kounios, Markus Brede, Richard A. Watson. How evolution learns to generalise: Using the principles of learning theory to understand the evolution of developmental organisation
0 -- 0Eduardo D. Sontag. Dynamic compensation, parameter identifiability, and equivariances
0 -- 0Anne-Claire M. F. Martines, Karen van Eunen, Dirk-Jan Reijngoud, Barbara M. Bakker. The promiscuous enzyme medium-chain 3-keto-acyl-CoA thiolase triggers a vicious cycle in fatty-acid beta-oxidation
0 -- 0Irene Otero-Muras, Pencho Yordanov, Jörg Stelling. Chemical Reaction Network Theory elucidates sources of multistability in interferon signaling
0 -- 0Mónica L. García-Gómez, Eugenio Azpeitia, Elena R. Álvarez-Buylla. A dynamic genetic-hormonal regulatory network model explains multiple cellular behaviors of the root apical meristem of Arabidopsis thaliana
0 -- 0Lenna X. Peterson, Amitava Roy, Charles Christoffer, Genki Terashi, Daisuke Kihara. Modeling disordered protein interactions from biophysical principles
0 -- 0Xiaoliang Yang, Zihua Wang, Zhichu Xiang, Dan Li, Zhiyuan Hu, Wei Cui, Lingling Geng, Qiaojun Fang. Peptide probes derived from pertuzumab by molecular dynamics modeling for HER2 positive tumor imaging
0 -- 0Dipjyoti Das, Supravat Dey, Robert C. Brewster, Sandeep Choubey. Effect of transcription factor resource sharing on gene expression noise
0 -- 0Imane Boudellioua, Rozaimi B. Mahamad Razali, Maxat Kulmanov, Yasmeen Hashish, Vladimir B. Bajic, Eva Goncalves-Serra, Nadia Schoenmakers, Georgios V. Gkoutos, Paul N. Schofield, Robert Hoehndorf. Semantic prioritization of novel causative genomic variants
0 -- 0Steffen Klamt, Georg Regensburger, Matthias P. Gerstl, Christian Jungreuthmayer, Stefan Schuster, Radhakrishnan Mahadevan, Jürgen Zanghellini, Stefan Müller 0009. From elementary flux modes to elementary flux vectors: Metabolic pathway analysis with arbitrary linear flux constraints
0 -- 0Wan Yang, Liang Wen, Shen-Long Li, Kai Chen, Wen-yi Zhang, Jeffrey Shaman. Geospatial characteristics of measles transmission in China during 2005-2014
0 -- 0Vijay Singh, Ilya Nemenman. Simple biochemical networks allow accurate sensing of multiple ligands with a single receptor
0 -- 0Jonas Ranft, Leandro G. Almeida, Pamela C. Rodriguez, Antoine Triller, Vincent Hakim. An aggregation-removal model for the formation and size determination of post-synaptic scaffold domains
0 -- 0Iman Habibi, Raymond Cheong, Tomasz Lipniacki, Andre Levchenko, Effat S. Emamian, Ali Abdi. Computation and measurement of cell decision making errors using single cell data
0 -- 0Nicolas Gauvrit, Hector Zenil, Fernando Soler-Toscano, Jean-Paul Delahaye, Peter Brugger. Human behavioral complexity peaks at age 25
0 -- 0Xiuli Chen, Kieran Mohr, Joseph M. Galea. Predicting explorative motor learning using decision-making and motor noise
0 -- 0Thomas A. Peterson, Iris Ivy M. Gauran, Junyong Park, DoHwan Park, Maricel G. Kann. Oncodomains: A protein domain-centric framework for analyzing rare variants in tumor samples
0 -- 0Tobias U. Hauser, Michael Moutoussis, Reto Iannaccone, Silvia Brem, Susanne Walitza, Renate Drechsler, Peter Dayan, Raymond J. Dolan. Increased decision thresholds enhance information gathering performance in juvenile Obsessive-Compulsive Disorder (OCD)
0 -- 0Viveca Lindahl, Alessandra Villa, Berk Hess. Sequence dependency of canonical base pair opening in the DNA double helix
0 -- 0Mireya Plass, Simon H. Rasmussen, Anders Krogh. Highly accessible AU-rich regions in 3' untranslated regions are hotspots for binding of regulatory factors
0 -- 0Abdellali Kelil, Benjamin Dubreuil, Emmanuel D. Levy, Stephen W. Michnick. Exhaustive search of linear information encoding protein-peptide recognition
0 -- 0Tom Sumner, Richard J. Orton, Darren M. Green, Rowland R. Kao, Simon Gubbins. Quantifying the roles of host movement and vector dispersal in the transmission of vector-borne diseases of livestock
0 -- 0Francesca Mastrogiuseppe, Srdjan Ostojic. Intrinsically-generated fluctuating activity in excitatory-inhibitory networks
0 -- 0Hildur Knutsdottir, Cole Zmurchok, Dhananjay Bhaskar, Eirikur Palsson, Damian Dalle Nogare, Ajay B. Chitnis, Leah Edelstein-Keshet. Polarization and migration in the zebrafish posterior lateral line system
0 -- 0Tilo Schwalger, Moritz Deger, Wulfram Gerstner. Towards a theory of cortical columns: From spiking neurons to interacting neural populations of finite size
0 -- 0Wen-Ting Chu, Jane Clarke, Sarah L. Shammas, Jin Wang. Role of non-native electrostatic interactions in the coupled folding and binding of PUMA with Mcl-1
0 -- 0Martin Pirkl, Madeline Diekmann, Marlies van der Wees, Niko Beerenwinkel, Holger Fröhlich, Florian Markowetz. Inferring modulators of genetic interactions with epistatic nested effects models
0 -- 0Jörn Diedrichsen, Nikolaus Kriegeskorte. Representational models: A common framework for understanding encoding, pattern-component, and representational-similarity analysis
0 -- 0Georgia Melagraki, Evangelos Ntougkos, Vagelis Rinotas, Christos Papaneophytou, Georgios Leonis, Thomas M. Mavromoustakos, George Kontopidis, Eleni Douni, Antreas Afantitis, George Kollias. Cheminformatics-aided discovery of small-molecule Protein-Protein Interaction (PPI) dual inhibitors of Tumor Necrosis Factor (TNF) and Receptor Activator of NF-κB Ligand (RANKL)
0 -- 0Andrew F. Brouwer, Mark H. Weir, Marisa C. Eisenberg, Rafael Meza, Joseph N. S. Eisenberg. Dose-response relationships for environmentally mediated infectious disease transmission models
0 -- 0Anish K. Simhal, Cecilia Aguerrebere, Forrest Collman, Joshua T. Vogelstein, Kristina D. Micheva, Richard J. Weinberg, Stephen J. Smith, Guillermo Sapiro. Probabilistic fluorescence-based synapse detection
0 -- 0Yunpeng Cai, Wei Zheng, Jin Yao, Yujie Yang, Volker Mai, Qi Mao, Yijun Sun. ESPRIT-Forest: Parallel clustering of massive amplicon sequence data in subquadratic time
0 -- 0Ofir Shukron, David Holcman. Transient chromatin properties revealed by polymer models and stochastic simulations constructed from Chromosomal Capture data
0 -- 0Morgan Taschuk, Greg Wilson. Ten simple rules for making research software more robust
0 -- 0Serena Bradde, Marija Vucelja, Tiberiu Tesileanu, Vijay Balasubramanian. Dynamics of adaptive immunity against phage in bacterial populations
0 -- 0Yonatan Savir, Alexander Martynov, Michael Springer. Achieving global perfect homeostasis through transporter regulation
0 -- 0Yann Zerlaut, Alain Destexhe. Heterogeneous firing responses predict diverse couplings to presynaptic activity in mice layer V pyramidal neurons
0 -- 0Claus Fritzemeier, Daniel Hartleb, Balázs Szappanos, Balázs Papp, Martin J. Lercher. Erroneous energy-generating cycles in published genome scale metabolic networks: Identification and removal
0 -- 0Mindaugas Snipas, Lina Rimkute, Tadas Kraujalis, Kestutis Maciunas, Feliksas F. Bukauskas. Functional asymmetry and plasticity of electrical synapses interconnecting neurons through a 36-state model of gap junction channel gating
0 -- 0Fayyaz ul Amir Afsar Minhas, Eric D. Ross, Asa Ben-Hur. Amino acid composition predicts prion activity