Journal: PLoS Computational Biology

Volume 14, Issue 6

0 -- 0Shivam Gupta, Julien Varennes, Hendrik C. Korswagen, Andrew Mugler. Temporal precision of regulated gene expression
0 -- 0Jennifer Lu, Steven L. Salzberg. Removing contaminants from databases of draft genomes
0 -- 0Lucas Boczkowski, Emanuele Natale, Ofer Feinerman, Amos Korman. Limits on reliable information flows through stochastic populations
0 -- 0J. Kyle Medley, Kiri Choi, Matthias König, Lucian P. Smith, Stanley Gu, Joseph Hellerstein, Stuart C. Sealfon, Herbert M. Sauro. Tellurium notebooks - An environment for reproducible dynamical modeling in systems biology
0 -- 0Sulav Duwal, Laura Dickinson, Saye Khoo, Max von Kleist. Hybrid stochastic framework predicts efficacy of prophylaxis against HIV: An example with different dolutegravir prophylaxis schemes
0 -- 0Wei-Ven Tee, Enrico Guarnera, Igor N. Berezovsky. Reversing allosteric communication: From detecting allosteric sites to inducing and tuning targeted allosteric response
0 -- 0Bruck Taddese, Madeline Deniaud, Antoine Garnier, Asma Tiss, Hajer Guissouma, Hervé Abdi, Daniel Henrion, Marie Chabbert. Evolution of chemokine receptors is driven by mutations in the sodium binding site
0 -- 0Nicolas Henry, Eva-Maria Krammer, Florian Stengel, Quentin Adams, François Van Liefferinge, Ellen Hubin, Rui Chaves, Rouslan Efremov, Ruedi Aebersold, Guy Vandenbussche, Martine Prévost, Vincent Raussens, Stéphanie Deroo. Lipidated apolipoprotein E4 structure and its receptor binding mechanism determined by a combined cross-linking coupled to mass spectrometry and molecular dynamics approach
0 -- 0Sergio Luengo-Sanchez, Isabel Fernaud, Concha Bielza, Ruth Benavides-Piccione, Pedro Larrañaga, Javier DeFelipe. 3D morphology-based clustering and simulation of human pyramidal cell dendritic spines
0 -- 0Logan C. Brooks, David C. Farrow, Sangwon Hyun, Ryan J. Tibshirani, Roni Rosenfeld. Nonmechanistic forecasts of seasonal influenza with iterative one-week-ahead distributions
0 -- 0Alexander Bird, Magnus J. E. Richardson. Transmission of temporally correlated spike trains through synapses with short-term depression
0 -- 0Benjamin Werner, Andrea Sottoriva. Variation of mutational burden in healthy human tissues suggests non-random strand segregation and allows measuring somatic mutation rates
0 -- 0Philipp Schustek, Rubén Moreno-Bote. Instance-based generalization for human judgments about uncertainty
0 -- 0Angelika Manhart, Stefanie Windner, Mary Baylies, Alex Mogilner. Mechanical positioning of multiple nuclei in muscle cells
0 -- 0Jonathan U. Harrison, Ruth E. Baker. The impact of temporal sampling resolution on parameter inference for biological transport models
0 -- 0Fahad Alhasoun, Faisal Aleissa, May Alhazzani, Luis Gregorio Moyano, Claudio S. Pinhanez, Marta C. González. Age density patterns in patients medical conditions: A clustering approach
0 -- 0Deena R. Schmidt, Roberto F. Galán, Peter J. Thomas. Stochastic shielding and edge importance for Markov chains with timescale separation
0 -- 0Alexander Borst. A biophysical mechanism for preferred direction enhancement in fly motion vision
0 -- 0Giri P. Krishnan, Burke Q. Rosen, Jen-Yung Chen, Lyle Muller, Terrence J. Sejnowski, Sydney S. Cash, Eric Halgren, Maxim Bazhenov. Thalamocortical and intracortical laminar connectivity determines sleep spindle properties
0 -- 0Nathaniel Mon Père, Tom Lenaerts, Jorge M. Pacheco, David Dingli. Evolutionary dynamics of paroxysmal nocturnal hemoglobinuria
0 -- 0Filip Radom, Andreas Plückthun, Emanuele Paci. Assessment of ab initio models of protein complexes by molecular dynamics
0 -- 0Yuji Sakai, Atsushi Mochizuki, Kazuhisa Kinoshita, Tatsuya Hirano, Masashi Tachikawa. Modeling the functions of condensin in chromosome shaping and segregation
0 -- 0Koichi Higashi, Shinya Suzuki, Shin Kurosawa, Hiroshi Mori, Ken Kurokawa. Latent environment allocation of microbial community data
0 -- 0Kumaresan Jayaraman, Alex N. Morley, Dániel Szöllosi, Tsjerk A. Wassenaar, Harald H. Sitte, Thomas Stockner. Dopamine transporter oligomerization involves the scaffold domain, but spares the bundle domain
0 -- 0Adrien Henry, Mathieu Hemery, Paul François. φ-evo: A program to evolve phenotypic models of biological networks
0 -- 0Luke Zappia, Belinda Phipson, Alicia Oshlack. Exploring the single-cell RNA-seq analysis landscape with the scRNA-tools database
0 -- 0Sung-Young Shin, Anna-Katharina Müller, Nandini Verma, Sima Lev, Lan K. Nguyen. Systems modelling of the EGFR-PYK2-c-Met interaction network predicts and prioritizes synergistic drug combinations for triple-negative breast cancer
0 -- 0Christian Klos, Daniel Miner, Jochen Triesch. Bridging structure and function: A model of sequence learning and prediction in primary visual cortex
0 -- 0Tobias S. Brett, Eamon B. O'Dea, Éric Marty, Paige B. Miller, Andrew W. Park, John M. Drake, Pejman Rohani. Anticipating epidemic transitions with imperfect data
0 -- 0Vivek Navale, Philip E. Bourne. Cloud computing applications for biomedical science: A perspective
0 -- 0Ya-Zhou Shi, Lei Jin, Chen-Jie Feng, Ya-Lan Tan, Zhi-Jie Tan. Predicting 3D structure and stability of RNA pseudoknots in monovalent and divalent ion solutions
0 -- 0Suma Ghosh, Matthew J. Ferrari, Ashutosh K. Pathak, Isabella M. Cattadori. Changes in parasite traits, rather than intensity, affect the dynamics of infection under external perturbation
0 -- 0Christiana N. Fogg, Diane E. Kovats, Ron Shamir. 2018 ISCB Innovator Award recognizes M. Madan Babu
0 -- 0Mary M. Rorick, Edward B. Baskerville, Thomas S. Rask, Karen P. Day, Mercedes Pascual. Identifying functional groups among the diverse, recombining antigenic var genes of the malaria parasite Plasmodium falciparum from a local community in Ghana
0 -- 0Alexander Kihm, Lars Kaestner, Christian Wagner 0011, Stephan Quint. Classification of red blood cell shapes in flow using outlier tolerant machine learning
0 -- 0Christiana N. Fogg, Diane E. Kovats, Ron Shamir. 2018 ISCB Overton Prize awarded to Cole Trapnell
0 -- 0Michael Trogdon, Brian Drawert, Carlos Gomez, Samhita P. Banavar, Tau-Mu Yi, Otger Campàs, Linda R. Petzold. The effect of cell geometry on polarization in budding yeast
0 -- 0Gregory J. Gerling, Lingtian Wan, Benjamin U. Hoffman, Yuxiang Wang, Ellen A. Lumpkin. Computation predicts rapidly adapting mechanotransduction currents cannot account for tactile encoding in Merkel cell-neurite complexes
0 -- 0Xiaoru Xue, Chuan Xue, Min Tang. The role of intracellular signaling in the stripe formation in engineered Escherichia coli populations
0 -- 0Sylvie Estrela, Sam P. Brown. Community interactions and spatial structure shape selection on antibiotic resistant lineages
0 -- 0Daniel Munro, Dario Ghersi, Mona Singh 0001. Two critical positions in zinc finger domains are heavily mutated in three human cancer types
0 -- 0Fabrizio Cleri, Fabio Landuzzi, Ralf Blossey. Mechanical evolution of DNA double-strand breaks in the nucleosome
0 -- 0Peter Eastman, Jade Shi, Bharath Ramsundar, Vijay S. Pande. Solving the RNA design problem with reinforcement learning
0 -- 0Brendan A. Bicknell, Zac Pujic, Peter Dayan, Geoffrey J. Goodhill. Control of neurite growth and guidance by an inhibitory cell-body signal
0 -- 0Yvonne J. W. Rozendaal, Yanan Wang, Yared Paalvast, Lauren L. Tambyrajah, Zhuang Li, Ko Willems van Dijk, Patrick C. N. Rensen, Jan A. Kuivenhoven, Albert K. Groen, Peter A. J. Hilbers, Natal A. W. van Riel. In vivo and in silico dynamics of the development of Metabolic Syndrome