Journal: PLoS Computational Biology

Volume 9, Issue 4

0 -- 0Juergen Dukart, Ferath Kherif, Karsten Mueller, Stanislaw Adaszewski, Matthias L. Schroeter, Richard S. J. Frackowiak, Bogdan Draganski. Generative FDG-PET and MRI Model of Aging and Disease Progression in Alzheimer's Disease
0 -- 0K. Bretonnel Cohen, Lawrence E. Hunter. Chapter 16: Text Mining for Translational Bioinformatics
0 -- 0Emily V. Chambers, Wendy A. Bickmore, Colin A. Semple. Divergence of Mammalian Higher Order Chromatin Structure Is Associated with Developmental Loci
0 -- 0Yana Bromberg. Chapter 15: Disease Gene Prioritization
0 -- 0Kyriakos Kentzoglanakis, Diana García López, Sam P. Brown, Richard A. Goldstein. The Evolution of Collective Restraint: Policing and Obedience among Non-conjugative Plasmids
0 -- 0Matthew R. Nassar, Joshua I. Gold. A Healthy Fear of the Unknown: Perspectives on the Interpretation of Parameter Fits from Computational Models in Neuroscience
0 -- 0yassmine chebaro, Ismail Amal, Natacha Rochel, Cécile Rochette-Egly, Roland H. Stote, Annick Dejaegere. Phosphorylation of the Retinoic Acid Receptor Alpha Induces a Mechanical Allosteric Regulation and Changes in Internal Dynamics
0 -- 0Yosef Y. Kuttner, Tal Nagar, Stanislav Engel. 2+
0 -- 0Bernhard Nessler, Michael Pfeiffer, Lars Buesing, Wolfgang Maass. Bayesian Computation Emerges in Generic Cortical Microcircuits through Spike-Timing-Dependent Plasticity
0 -- 0Andrei Yu. Zinovyev, Inna Kuperstein, Emmanuel Barillot, Wolf-Dietrich Heyer. Synthetic Lethality between Gene Defects Affecting a Single Non-essential Molecular Pathway with Reversible Steps
0 -- 0Joseph L. Baker, Nicolas Biais, Florence Tama. Steered Molecular Dynamics Simulations of a Type IV Pilus Probe Initial Stages of a Force-Induced Conformational Transition
0 -- 0Daniel L. Parton, Alex Tek, Marc Baaden, Mark S. P. Sansom. Formation of Raft-Like Assemblies within Clusters of Influenza Hemagglutinin Observed by MD Simulations
0 -- 0Jordan R. Willis, Bryan S. Briney, Samuel L. DeLuca, James E. Crowe Jr., Jens Meiler. Human Germline Antibody Gene Segments Encode Polyspecific Antibodies
0 -- 0Domenico Campolo, Ferdinan Widjaja, Hong Xu, Wei Tech Ang, Etienne Burdet. Analysis of Accuracy in Pointing with Redundant Hand-held Tools: A Geometric Approach to the Uncontrolled Manifold Method
0 -- 0Juho Rousu, Daniel D. Agranoff, Olugbemiro Sodeinde, John Shawe-Taylor, Delmiro Fernandez-Reyes. Biomarker Discovery by Sparse Canonical Correlation Analysis of Complex Clinical Phenotypes of Tuberculosis and Malaria
0 -- 0Dominic Standage, Hongzhi You, Da-Hui Wang, Michael C. Dorris. Trading Speed and Accuracy by Coding Time: A Coupled-circuit Cortical Model
0 -- 0Adria Carbo, Raquel Hontecillas, Barbara Kronsteiner, Monica Viladomiu, Mireia Pedragosa, Pinyi Lu, Casandra W. Philipson, Stefan Hoops, Madhav V. Marathe, Stephen Eubank, Keith R. Bisset, Katherine V. Wendelsdorf, Abdul Jarrah, Yongguo Mei, Josep Bassaganya-Riera. Systems Modeling of Molecular Mechanisms Controlling Cytokine-driven CD4+ T Cell Differentiation and Phenotype Plasticity
0 -- 0Annabelle Ballesta, Jonathan Lopez, Nikolay Popgeorgiev, Philippe Gonzalo, Marie Doumic, Germain Gillet. Data-Driven Modeling of Src Control on the Mitochondrial Pathway of Apoptosis: Implication for Anticancer Therapy Optimization
0 -- 0Fuhai Li, Zheng Yin, Guangxu Jin, Hong Zhao, Stephen T. C. Wong. Chapter 17: Bioimage Informatics for Systems Pharmacology
0 -- 0Stefano Lonardi, Denisa Duma, Matthew Alpert, Francesca Cordero, Marco Beccuti, Prasanna R. Bhat, Yonghui Wu, Gianfranco Ciardo, Burair Alsaihati, Yaqin Ma, Steve Wanamaker, Josh Resnik, Serdar Bozdag, Ming-Cheng Luo, Timothy J. Close. Combinatorial Pooling Enables Selective Sequencing of the Barley Gene Space
0 -- 0Masayo Inoue, Kunihiko Kaneko. Cooperative Adaptive Responses in Gene Regulatory Networks with Many Degrees of Freedom
0 -- 0Henrik Failmezger, Benjamin Jaegle, Andrea Schrader, Martin Hülskamp, Achim Tresch. Semi-automated 3D Leaf Reconstruction and Analysis of Trichome Patterning from Light Microscopic Images
0 -- 0Anne-Sophie Coquel, Jean-Pascal Jacob, Maël Primet, Alice Demarez, Mariella Dimiccoli, Thomas Julou, Lionel Moisan, Ariel B. Lindner, Hugues Berry. Escherichia coli Is Governed by Diffusion and Nucleoid Macromolecular Crowding Effect
0 -- 0Lin-tai Da, Fátima Pardo Avila, Dong Wang, Xuhui Huang. A Two-State Model for the Dynamics of the Pyrophosphate Ion Release in Bacterial RNA Polymerase
0 -- 0Matthias Schultze-Kraft, Markus Diesmann, Sonja Grün, Moritz Helias. Noise Suppression and Surplus Synchrony by Coincidence Detection
0 -- 0Joseph E. Goose, Mark S. P. Sansom. Reduced Lateral Mobility of Lipids and Proteins in Crowded Membranes
0 -- 0Julian E. Fuchs, Susanne von Grafenstein, Roland G. Huber, Michael A. Margreiter, Gudrun M. Spitzer, Hannes G. Wallnoefer, Klaus R. Liedl. Cleavage Entropy as Quantitative Measure of Protease Specificity
0 -- 0Purushottam D. Dixit, Sergei Maslov. Evolutionary Capacitance and Control of Protein Stability in Protein-Protein Interaction Networks
0 -- 0Recep Colak, Taehyung Kim, Magali Michaut, Mark G. F. Sun, Manuel Irimia, Jeremy Bellay, Chad L. Myers, Benjamin J. Blencowe, Philip M. Kim. Distinct Types of Disorder in the Human Proteome: Functional Implications for Alternative Splicing
0 -- 0Nicole Kleinstreuer, David Dix, Michael Rountree, Nancy Baker, Nisha Sipes, David Reif, Richard Spencer, Thomas Knudsen. A Computational Model Predicting Disruption of Blood Vessel Development
0 -- 0Geoffrey L. Johnston, David L. Smith, David A. Fidock. Plasmodium falciparum Infection and Transmission
0 -- 0Hans B. Sieburg, Giulio Cattarossi, Christa E. Müller-Sieburg. Lifespan Differences in Hematopoietic Stem Cells are Due to Imperfect Repair and Unstable Mean-Reversion
0 -- 0Nicolas Frémaux, Henning Sprekeler, Wulfram Gerstner. Reinforcement Learning Using a Continuous Time Actor-Critic Framework with Spiking Neurons
0 -- 0Gabriela V. Cohen Freue, Anna Meredith, Derek Smith, Axel Bergman, Mayu Sasaki, Karen K. Y. Lam, Zsuzsanna Hollander, Nina Opushneva, Mandeep Takhar, David Lin, Janet Wilson-McManus, Robert Balshaw, Paul A. Keown, Christoph H. Borchers, Bruce McManus, Raymond T. Ng, W. Robert McMaster. Computational Biomarker Pipeline from Discovery to Clinical Implementation: Plasma Proteomic Biomarkers for Cardiac Transplantation
0 -- 0Lauren M. Bragg, Glenn Stone, Margaret K. Butler, Philip Hugenholtz, Gene W. Tyson. Shining a Light on Dark Sequencing: Characterising Errors in Ion Torrent PGM Data
0 -- 0Joseph G. Makin, Matthew R. Fellows, Philip N. Sabes. Learning Multisensory Integration and Coordinate Transformation via Density Estimation
0 -- 0Xiaobo Wan, Yue Ma, Christopher L. McClendon, Lily Jun-shen Huang, Niu Huang. Ab Initio Modeling and Experimental Assessment of Janus Kinase 2 (JAK2) Kinase-Pseudokinase Complex Structure
0 -- 0Adam Ponzi, Jeffery R. Wickens. Optimal Balance of the Striatal Medium Spiny Neuron Network
0 -- 0Javad Golji, Mohammad R. K. Mofrad. The Interaction of Vinculin with Actin
0 -- 0Marie Devaine, Florian Waszak, Pascal Mamassian. Dual Process for Intentional and Reactive Decisions