| 1036 | -- | 0 | T. M. Murali. Guest Editorial |
| 1037 | -- | 1051 | Asish Ghoshal, Jinyi Zhang, Michael A. Roth, Kevin Muyuan Xia, Ananth Y. Grama, Somali Chaterji. A Distributed Classifier for MicroRNA Target Prediction with Validation Through TCGA Expression Data |
| 1052 | -- | 1065 | Shi Qiao, Mehmet Koyutürk, Z. Meral Özsoyoglu. Querying of Disparate Association and Interaction Data in Biomedical Applications |
| 1066 | -- | 1078 | Alexej Gossmann, Shaolong Cao, Damian Brzyski, Lan-Juan Zhao, Hong-Wen Deng, Yu-Ping Wang. A Sparse Regression Method for Group-Wise Feature Selection with False Discovery Rate Control |
| 1079 | -- | 1091 | Md Abdul Alim, Ahmet Ay, Md Mahmudul Hasan, My T. Thai, Tamer Kahveci. Construction of Signaling Pathways with RNAi Data and Multiple Reference Networks |
| 1092 | -- | 0 | Xiaodan Fan, Xinglai Ji, Rui Jiang. Guest Editorial for Special Section on the Sixth National Conference on Bioinformatics and System Biology of China |
| 1093 | -- | 1106 | Mahdi Zamanighomi, Mostafa Zamanian, Michael Kimber, Zhengdao Wang. Gene Regulatory Network Inference from Perturbed Time-Series Expression Data via Ordered Dynamical Expansion of Non-Steady State Actors |
| 1107 | -- | 1110 | Ke Liu, Sha Hou, Junbiao Dai, Zhirong Sun. PyMut: A Web Tool for Overlapping Gene Loss-of-Function Mutation Design |
| 1111 | -- | 1121 | Xiangfei Cheng, Yue Hou, Yumin Nie, Yiru Zhang, Huan Huang, Hongde Liu, Xiao Sun. Nucleosome Positioning of Intronless Genes in the Human Genome |
| 1122 | -- | 1123 | Ezio Bartocci, Pietro Liò, Nicola Paoletti. Guest Editors' Introduction to the Special Section on the 14th International Conference on Computational Methods in Systems Biology (CMSB 2016) |
| 1124 | -- | 1137 | Jérôme Feret, Kim Quyen Ly. Local Traces: An Over-Approximation of the Behavior of the Proteins in Rule-Based Models |
| 1138 | -- | 1151 | François Fages, Thierry Martinez, David A. Rosenblueth, Sylvain Soliman. Influence Networks Compared with Reaction Networks: Semantics, Expressivity and Attractors |
| 1152 | -- | 1166 | Chunyan Mu, Peter Dittrich, David Parker 0001, Jonathan E. Rowe. Organisation-Oriented Coarse Graining and Refinement of Stochastic Reaction Networks |
| 1167 | -- | 1179 | Loïc Paulevé. Reduction of Qualitative Models of Biological Networks for Transient Dynamics Analysis |
| 1180 | -- | 1192 | Michael Backenköhler, Luca Bortolussi, Verena Wolf. Moment-Based Parameter Estimation for Stochastic Reaction Networks in Equilibrium |
| 1193 | -- | 1202 | Alejandro Fernández Villaverde, Kolja Becker, Julio R. Banga. PREMER: A Tool to Infer Biological Networks |
| 1203 | -- | 1216 | Andrzej Mizera, Jun Pang, Cui Su, Qixia Yuan. ASSA-PBN: A Toolbox for Probabilistic Boolean Networks |
| 1217 | -- | 1228 | Eugen Czeizler, Wu Kai Chiu, Cristian Gratie, Krishna Kanhaiya, Ion Petre. Structural Target Controllability of Linear Networks |
| 1229 | -- | 1230 | Tijana Milenkovic, Sarath Chandra Janga. Great Lakes Bioinformatics Conference (GLBIO) 2015 Special Section Editorial |
| 1231 | -- | 1238 | James B. Pease, Benjamin K. Rosenzweig. Encoding Data Using Biological Principles: The Multisample Variant Format for Phylogenomics and Population Genomics |
| 1239 | -- | 1246 | Adam Roth, Sandeep Subramanian, Madhavi K. Ganapathiraju. Towards Extracting Supporting Information About Predicted Protein-Protein Interactions |
| 1247 | -- | 1258 | Satwica Yerneni, Ishita K. Khan, Qing Wei, Daisuke Kihara. IAS: Interaction Specific GO Term Associations for Predicting Protein-Protein Interaction Networks |
| 1259 | -- | 1269 | Seyedsasan Hashemikhabir, Ran Xia, Yang Xiang, Sarath Chandra Janga. A Framework for Identifying Genotypic Information from Clinical Records: Exploiting Integrated Ontology Structures to Transfer Annotations between ICD Codes and Gene Ontologies |
| 1270 | -- | 1283 | Pranjal Patra, Tatsuo Izawa, Lourdes Peña Castillo. REPA: Applying Pathway Analysis to Genome-Wide Transcription Factor Binding Data |
| 1284 | -- | 1289 | Rodrigo F. Ramalho, Sujun Li, Predrag Radivojac, Matthew W. Hahn. Proteomic Evidence for In-Frame and Out-of-Frame Alternatively Spliced Isoforms in Human and Mouse |
| 1290 | -- | 1300 | Rami Al-ouran, Robert Schmidt, Ashwini Naik, Jeffrey Jones, Frank Drews, David W. Juedes, Laura Elnitski, Lonnie R. Welch. Discovering Gene Regulatory Elements Using Coverage-Based Heuristics |
| 1301 | -- | 1314 | Liliana Ironi, Ettore Lanzarone. A Model-Based Tool for the Analysis and Design of Gene Regulatory Networks |
| 1315 | -- | 1324 | Chun-Qiu Xia, Ke Han, Yong Qi, Yang Zhang, Dong-jun Yu. A Self-Training Subspace Clustering Algorithm under Low-Rank Representation for Cancer Classification on Gene Expression Data |
| 1325 | -- | 1332 | Xinyu He, Lishuang Li, Yang Liu, Xiaoming Yu, Jun Meng. A Two-Stage Biomedical Event Trigger Detection Method Integrating Feature Selection and Word Embeddings |
| 1333 | -- | 1343 | Iman Deznabi, Mohammad Mobayen, Nazanin Jafari, Oznur Tastan, Erman Ayday. An Inference Attack on Genomic Data Using Kinship, Complex Correlations, and Phenotype Information |
| 1344 | -- | 1350 | Qian Xie, Xiaoyan He, Fangji Yang, Xuling Liu, Ying Li, Yujing Liu, ZhengMeng Yang, Jianhai Yu, Bao Zhang, Wei Zhao. Analysis of the Genome Sequence and Prediction of B-Cell Epitopes of the Envelope Protein of Middle East Respiratory Syndrome-Coronavirus |
| 1351 | -- | 1364 | Yoram Zarai, Michael Margaliot, Eduardo D. Sontag, Tamir Tuller. Controllability Analysis and Control Synthesis for the Ribosome Flow Model |
| 1365 | -- | 1378 | Shangce Gao, Shuangbao Song, Jiujun Cheng, Yuki Todo, MengChu Zhou. Incorporation of Solvent Effect into Multi-Objective Evolutionary Algorithm for Improved Protein Structure Prediction |
| 1379 | -- | 1389 | Karlene Nicole Meyer, Michelle R. Lacey. Modeling Methylation Patterns with Long Read Sequencing Data |
| 1390 | -- | 1402 | Guoxian Yu, Guangyuan Fu, Jun Wang 0035, Yingwen Zhao. NewGOA: Predicting New GO Annotations of Proteins by Bi-Random Walks on a Hybrid Graph |