Journal: IEEE/ACM Trans. Comput. Biology Bioinform.

Volume 16, Issue 4

1049 -- 1062Aisharjya Sarkar, Yuanfang Ren, Rasha Elhesha, Tamer Kahveci. A New Algorithm for Counting Independent Motifs in Probabilistic Networks
1063 -- 1076Alexey Markin, Oliver Eulenstein. Computing Manhattan Path-Difference Median Trees: A Practical Local Search Approach
1077 -- 1090Misagh Kordi, Mukul S. Bansal. Exact Algorithms for Duplication-Transfer-Loss Reconciliation with Non-Binary Gene Trees
1091 -- 1106Priyanka Ghosh, Ananth Kalyanaraman. FastEtch: A Fast Sketch-Based Assembler for Genomes
1107 -- 1116Olivia Choudhury, Ankush Chakrabarty, Scott J. Emrich. Highly Accurate and Efficient Data-Driven Methods for Genotype Imputation
1117 -- 1131Tony Pan, Patrick Flick, Chirag Jain, Yongchao Liu, Srinivas Aluru. Kmerind: A Flexible Parallel Library for K-mer Indexing of Biological Sequences on Distributed Memory Systems
1132 -- 1142Enrico Siragusa, Niina Haiminen, Filippo Utro, Laxmi Parida. Linear Time Algorithms to Construct Populations Fitting Multiple Constraint Distributions at Genomic Scales
1143 -- 1153Deeptak Verma, Gevorg Grigoryan, Chris Bailey-Kellogg. Pareto Optimization of Combinatorial Mutagenesis Libraries
1154 -- 1167Muhibur Rasheed, Nathan Clement, Abhishek Bhowmick 0001, Chandrajit L. Bajaj. Statistical Framework for Uncertainty Quantification in Computational Molecular Modeling
1168 -- 1181Wenruo Bai, Jeffrey Bilmes, William S. Noble. Submodular Generalized Matching for Peptide Identification in Tandem Mass Spectrometry
1182 -- 1183Quan Zou 0001, Qi Liu. Advanced Machine Learning Techniques for Bioinformatics
1184 -- 1192Qinhu Zhang, Lin Zhu 0008, De-Shuang Huang. High-Order Convolutional Neural Network Architecture for Predicting DNA-Protein Binding Sites
1193 -- 1202Min Li 0007, Zhihui Fei, Min Zeng, Fang-Xiang Wu, Yaohang Li, Yi Pan 0001, Jianxin Wang. Automated ICD-9 Coding via A Deep Learning Approach
1203 -- 1210Bin Liu 0014, Shumin Li. ProtDet-CCH: Protein Remote Homology Detection by Combining Long Short-Term Memory and Ranking Methods
1211 -- 1218Bingqiang Liu, Ling Han, Xiangrong Liu, Jichang Wu, Qin Ma 0003. Computational Prediction of Sigma-54 Promoters in Bacterial Genomes by Integrating Motif Finding and Machine Learning Strategies
1219 -- 1230Hongyu Liu, Qinmin Vivian Hu, Liang He 0001. Term-Based Personalization for Feature Selection in Clinical Handover Form Auto-Filling
1231 -- 1239Ran Su, Huichen Wu, Bo Xu, Xiaofeng Liu, Leyi Wei. Developing a Multi-Dose Computational Model for Drug-Induced Hepatotoxicity Prediction Based on Toxicogenomics Data
1240 -- 1249Liang Yu, Lin Gao. Human Pathway-Based Disease Network
1250 -- 1261Mahdi Imani, Ulisses de Mendonça Braga Neto. Control of Gene Regulatory Networks Using Bayesian Inverse Reinforcement Learning
1262 -- 1263Feng-Biao Guo, Xinglai Ji, Jian Huang 0004. Guest Editorial for Special Section on the 7th National Conference on Bioinformatics and Systems Biology of China
1264 -- 1273Leyi Wei, Pengwei Xing, Gaotao Shi, Zhiliang Ji, Quan Zou 0001. Fast Prediction of Protein Methylation Sites Using a Sequence-Based Feature Selection Technique
1274 -- 1279Yan Lin, Fa-Zhan Zhang, Kai Xue, Yi-Zhou Gao, Feng-Biao Guo. Identifying Bacterial Essential Genes Based on a Feature-Integrated Method
1280 -- 1287Yan Shi 0003, Bolun Zhang, Maolin Cai, Weiqing Xu. Coupling Effect of Double Lungs on a VCV Ventilator with Automatic Secretion Clearance Function
1288 -- 1301Ying Li 0004, Ye He, Siyu Han, Yanchun Liang. Identification and Functional Inference for Tumor-Associated Long Non-Coding RNA
1302 -- 1308Jun-Ping Zhang, Yi Liu, Wei Sun, Xiao-yang Zhao, La Ta, Wei-Sheng Guo. Characteristics of Myosin V Processivity
1309 -- 1312Peng-Mian Feng, Zhenyi Wang, Xiaoyu Yu. Predicting Antimicrobial Peptides by Using Increment of Diversity with Quadratic Discriminant Analysis Method
1313 -- 1315Guoshi Chai, Min Yu, Lixu Jiang, Yaocong Duan, Jian Huang 0004. HMMCAS: A Web Tool for the Identification and Domain Annotations of CAS Proteins
1316 -- 1321Hao Lin, Zhi-Yong Liang, Hua Tang, Wei Chen. Identifying Sigma70 Promoters with Novel Pseudo Nucleotide Composition
1322 -- 1323Erman Ayday, Muhammad Naveed 0001, Haixu Tang. GenoPri'17: International Workshop on Genome Privacy and Security
1324 -- 1327Alexander Senf. End-to-End Security for Local and Remote Human Genetic Data Applications at the EGA
1328 -- 1341Jean Louis Raisaro, Juan Ramón Troncoso-Pastoriza, Mickaël Misbach, João Sá Sousa, Sylvain Pradervand, Edoardo Missiaglia, Olivier Michielin, Bryan Ford, Jean-Pierre Hubaux. MedCo: Enabling Secure and Privacy-Preserving Exploration of Distributed Clinical and Genomic Data
1342 -- 1348Dixie B. Baker, Bartha M. Knoppers, Mark Phillips, David van Enckevort, Petra Kaufmann, Hanns Lochmuller, Domenica Taruscio. Privacy-Preserving Linkage of Genomic and Clinical Data Sets
1349 -- 1361Jake Weidman, William Aurite, Jens Grossklags. On Sharing Intentions, and Personal and Interdependent Privacy Considerations for Genetic Data: A Vignette Study
1362 -- 1363Ion I. Mandoiu, Pavel Skums, Alexander Zelikovsky. Guest Editors' Introduction to the Special Section on Bioinformatics Research and Applications
1364 -- 1373Nina Luhmann, Manuel Lafond, Annelyse Thévenin, Aïda Ouangraoua, Roland Wittler, Cédric Chauve. The SCJ Small Parsimony Problem for Weighted Gene Adjacencies
1374 -- 1385Alexey Markin, Oliver Eulenstein. Efficient Local Search for Euclidean Path-Difference Median Trees
1386 -- 1397Min Li 0007, Peng Ni, Xiaopei Chen, Jianxin Wang, Fang-Xiang Wu, Yi Pan 0001. Construction of Refined Protein Interaction Network for Predicting Essential Proteins
1398 -- 1408Roman Sergeev, Ivan Kavaliou, Uladzislau V. Sataneuski, Andrei Gabrielian, Alex Rosenthal, Michael Tartakovsky, Alexander V. Tuzikov. Genome-Wide Analysis of MDR and XDR Tuberculosis from Belarus: Machine-Learning Approach