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| 376 | -- | 389 | Lihua Zhang, Shihua Zhang. Comparison of Computational Methods for Imputing Single-Cell RNA-Sequencing Data |
| 390 | -- | 401 | Feng Li, Lin Gao, Bingbo Wang. Detection of Driver Modules with Rarely Mutated Genes in Cancers |
| 402 | -- | 410 | Hao Jiang 0009, Yushan Qiu, Wenpin Hou, Xiaoqing Cheng, Man Yi Yim, Wai-Ki Ching. Drug Side-Effect Profiles Prediction: From Empirical to Structural Risk Minimization |
| 411 | -- | 421 | Zhan-Ying Feng, Yong Wang. ELF: Extract Landmark Features By Optimizing Topology Maintenance, Redundancy, and Specificity |
| 422 | -- | 434 | Jianing Xi, Ao Li, Minghui Wang. HetRCNA: A Novel Method to Identify Recurrent Copy Number Alternations from Heterogeneous Tumor Samples Based on Matrix Decomposition Framework |
| 435 | -- | 448 | Ye Liu, Michael K. Ng, Stephen Wu 0001. Multi-Domain Networks Association for Biological Data Using Block Signed Graph Clustering |
| 449 | -- | 458 | Jifan Shi, Juan Zhao, Xiaoping Liu 0002, Luonan Chen, Tiejun Li. Quantifying Direct Dependencies in Biological Networks by Multiscale Association Analysis |
| 459 | -- | 468 | Rajan Kapoor, Aniruddha Datta, Chao Sima, Jianping Hua, Rosana Lopes, Michael L. Bittner. A Gaussian Mixture-Model Exploiting Pathway Knowledge for Dissecting Cancer Heterogeneity |
| 469 | -- | 482 | Paola Lecca, Angela Re. A Reaction-Based Model of the State Space of Chemical Reaction Systems Enables Efficient Simulations |
| 483 | -- | 494 | Kaspar Riesen, Miquel Ferrer, Horst Bunke. Approximate Graph Edit Distance in Quadratic Time |
| 495 | -- | 505 | Xiujuan Lei, Xiaoqin Yang, Fang-Xiang Wu. Artificial Fish Swarm Optimization Based Method to Identify Essential Proteins |
| 506 | -- | 515 | Rishika Sen, Somnath Tagore, Rajat K. De. ASAPP: Architectural Similarity-Based Automated Pathway Prediction System and Its Application in Host-Pathogen Interactions |
| 516 | -- | 525 | Haifen Chen, D. A. K. Maduranga, Piyushkumar A. Mundra, Jie Zheng 0002. Bayesian Data Fusion of Gene Expression and Histone Modification Profiles for Inference of Gene Regulatory Network |
| 526 | -- | 535 | Hossein Yazdani, Leo L. Cheng, David C. Christiani, Azam Yazdani. Bounded Fuzzy Possibilistic Method Reveals Information about Lung Cancer through Analysis of Metabolomics |
| 536 | -- | 546 | Yujie Li, Heng Huang, Hanbo Chen, Tianming Liu. Deep Neural Networks for In Situ Hybridization Grid Completion and Clustering |
| 547 | -- | 557 | Abazar Arabameri, Davud Asemani, Pegah Teymourpour. Detection of Colorectal Carcinoma Based on Microbiota Analysis Using Generalized Regression Neural Networks and Nonlinear Feature Selection |
| 558 | -- | 565 | Shengping Yang, Mitchell S. Wachtel, Jiangrong Wu. DFseq: Distribution-Free Method to Detect Differential Gene Expression for RNA-Sequencing Data |
| 566 | -- | 586 | Hussain A. Chowdhury, Dhruba Kumar Bhattacharyya, Jugal Kumar Kalita. Differential Expression Analysis of RNA-seq Reads: Overview, Taxonomy, and Tools |
| 587 | -- | 598 | Hang Wang, Jianing Xi, Minghui Wang, Ao Li. Dual-Layer Strengthened Collaborative Topic Regression Modeling for Predicting Drug Sensitivity |
| 599 | -- | 607 | Lishuang Li, Yang Liu, Meiyue Qin. Extracting Biomedical Events with Parallel Multi-Pooling Convolutional Neural Networks |
| 608 | -- | 622 | Aydin Saribudak, Adarsha A. Subick, Na Hyun Kim, Joshua A. Rutta, M. Ümit Uyar. Gene Expressions, Hippocampal Volume Loss, and MMSE Scores in Computation of Progression and Pharmacologic Therapy Effects for Alzheimer's Disease |
| 623 | -- | 634 | Qiu Xiao, Jiawei Luo, Cheng Liang, Guanghui Li 0003, Jie Cai, Pingjian Ding, Ying Liu 0027. Identifying lncRNA and mRNA Co-Expression Modules from Matched Expression Data in Ovarian Cancer |
| 635 | -- | 646 | Ali Karimnezhad, David R. Bickel. Incorporating Prior Knowledge about Genetic Variants into the Analysis of Genetic Association Data: An Empirical Bayes Approach |
| 647 | -- | 656 | Rongrong Zhang, Ming Hu, Yu Zhu, Zhaohui S. Qin, Ke Deng, Jun S. Liu. Inferring Spatial Organization of Individual Topologically Associated Domains via Piecewise Helical Model |
| 657 | -- | 667 | Zhen Cao, Shihua Zhang. Probe Efficient Feature Representation of Gapped K-mer Frequency Vectors from Sequences Using Deep Neural Networks |
| 668 | -- | 678 | Paul Fergus, Casimiro Aday Curbelo Montañez, Basma Abdulaimma, Paulo Lisboa, Carl Chalmers, Beth Pineles. Utilizing Deep Learning and Genome Wide Association Studies for Epistatic-Driven Preterm Birth Classification in African-American Women |
| 679 | -- | 689 | Qinhu Zhang, Lin Zhu 0008, Wenzheng Bao, De-Shuang Huang. Weakly-Supervised Convolutional Neural Network Architecture for Predicting Protein-DNA Binding |
| 690 | -- | 703 | Saurav Mallik, Sanghamitra Bandyopadhyay. WeCoMXP: Weighted Connectivity Measure Integrating Co-Methylation, Co-Expression and Protein-Protein Interactions for Gene-Module Detection |
| 704 | -- | 711 | Samah J. Fodeh, Taihua Li, Haya Jarad, Basmah Safdar. Classification of Patients with Coronary Microvascular Dysfunction |
| 712 | -- | 718 | Rui Yuan, Le Ou-Yang, Xiaohua Hu, Xiao-fei Zhang. Identifying Gene Network Rewiring Using Robust Differential Graphical Model with Multivariate $t$t-Distribution |
| 719 | -- | 725 | E. Onur Karakaslar, Baris Coskun, Hassiba Outilaft, Izzie-Jacques Namer, A. Ercument Cicek. Predicting Carbon Spectrum in Heteronuclear Single Quantum Coherence Spectroscopy for Online Feedback During Surgery |