| 1919 | -- | 0 | Jian Ma 0004. Guest Editorial for Selected Papers From ACM-BCB 2019 |
| 1920 | -- | 1932 | Yue Guo, Oleh Krupa, Jason L. Stein, Guorong Wu 0001, Ashok K. Krishnamurthy. SAU-Net: A Unified Network for Cell Counting in 2D and 3D Microscopy Images |
| 1933 | -- | 1945 | John Lazarsfeld, Jonathan Rodríguez, Mert Erden, Yuelin Liu, Lenore J. Cowen. Majority Vote Cascading: A Semi-Supervised Framework for Improving Protein Function Prediction |
| 1946 | -- | 1955 | Mira Barshai, Alice Aubert, Yaron Orenstein. G4detector: Convolutional Neural Network to Predict DNA G-Quadruplexes |
| 1956 | -- | 1967 | Pietro Pinoli, Gaia Ceddia, Stefano Ceri, Marco Masseroli. Predicting Drug Synergism by Means of Non-Negative Matrix Tri-Factorization |
| 1968 | -- | 1985 | Yang Qiu, Yang Zhang, Yifan Deng, Shichao Liu, Wen Zhang 0008. A Comprehensive Review of Computational Methods For Drug-Drug Interaction Detection |
| 1986 | -- | 1992 | Yuanying Zhuang, Xiangrong Liu, Yue Zhong, Longxin Wu. A Deep Ensemble Predictor for Identifying Anti-Hypertensive Peptides Using Pretrained Protein Embedding |
| 1993 | -- | 2002 | Xingyi Li, Ju Xiang, Fang-Xiang Wu, Min Li 0007. A Dual Ranking Algorithm Based on the Multiplex Network for Heterogeneous Complex Disease Analysis |
| 2003 | -- | 2016 | XiBin Jia, Zheng Sun, Qing Mi, Zhenghan Yang, Dawei Yang. A Multimodality-Contribution-Aware TripNet for Histologic Grading of Hepatocellular Carcinoma |
| 2017 | -- | 2025 | Shiming Wang, Jie Li 0055, Yadong Wang, Liran Juan. A Neighborhood-Based Global Network Model to Predict Drug-Target Interactions |
| 2026 | -- | 2038 | Xiaojian Ding, Fan Yang 0071, Yaoyi Zhong, Jie Cao. A Novel Recursive Gene Selection Method Based on Least Square Kernel Extreme Learning Machine |
| 2039 | -- | 2048 | Anik Chaudhuri, Anwoy Kumar Mohanty, Manoranjan Satpathy. A Parallelizable Model for Analyzing Cancer Tissue Heterogeneity |
| 2049 | -- | 2059 | Cunmei Ji, Yutian Wang, Zhen Gao, Lei Li, Jiancheng Ni, Chunhou Zheng 0001. A Semi-Supervised Learning Method for MiRNA-Disease Association Prediction Based on Variational Autoencoder |
| 2060 | -- | 2070 | Raktim Kumar Mondol, Nhan Duy Truong, Mohammad Reza, Samuel Ippolito, Esmaeil Ebrahimie, Omid Kavehei. AFExNet: An Adversarial Autoencoder for Differentiating Breast Cancer Sub-Types and Extracting Biologically Relevant Genes |
| 2071 | -- | 2079 | Jingjing Ma, Haitao Jiang, Daming Zhu, Runmin Yang. Algorithms and Hardness for Scaffold Filling to Maximize Increased Duo-Preservations |
| 2080 | -- | 2091 | Atheer A. Matroud, Christopher P. Tuffley, Michael D. Hendy. An Asymmetric Alignment Algorithm for Estimating Ancestor-Descendant Edit Distance for Tandem Repeats |
| 2092 | -- | 2110 | Qichang Zhao, Mengyun Yang, Zhongjian Cheng, Yaohang Li, Jianxin Wang 0001. Biomedical Data and Deep Learning Computational Models for Predicting Compound-Protein Relations |
| 2111 | -- | 2123 | Debraj Ghosh, Rajat K. De. Block Search Stochastic Simulation Algorithm (BlSSSA): A Fast Stochastic Simulation Algorithm for Modeling Large Biochemical Networks |
| 2124 | -- | 2136 | Ritabrata Sanyal, Devroop Kar, Ram Sarkar. Carcinoma Type Classification From High-Resolution Breast Microscopy Images Using a Hybrid Ensemble of Deep Convolutional Features and Gradient Boosting Trees Classifiers |
| 2137 | -- | 2148 | Lopamudra Dey, Anirban Mukhopadhyay 0001. Compact Genetic Algorithm-Based Feature Selection for Sequence-Based Prediction of Dengue-Human Protein Interactions |
| 2149 | -- | 2157 | Changli Feng, Jin Wu, Haiyan Wei, Lei Xu, Quan Zou 0001. CRCF: A Method of Identifying Secretory Proteins of Malaria Parasites |
| 2158 | -- | 2165 | Cheng-Hong Yang 0001, Kuo-Chuan Wu, Li-Yeh Chuang, Hsueh-Wei Chang. DeepBarcoding: Deep Learning for Species Classification Using DNA Barcoding |
| 2166 | -- | 2176 | Guoxian Yu, Yeqian Yang, Yangyang Yan, Maozu Guo 0001, Xiangliang Zhang 0001, Jun Wang 0035. DeepIDA: Predicting Isoform-Disease Associations by Data Fusion and Deep Neural Networks |
| 2177 | -- | 2187 | Jun Wang 0035, Long Zhang, An Zeng, Dawen Xia, Jiantao Yu, Guoxian Yu. DeepIII: Predicting Isoform-Isoform Interactions by Deep Neural Networks and Data Fusion |
| 2188 | -- | 2196 | Zhonghao Liu, Jing Jin, Yuxin Cui, Zheng Xiong, Alireza Nasiri, Yong Zhao 0014, Jianjun Hu. DeepSeqPanII: An Interpretable Recurrent Neural Network Model With Attention Mechanism for Peptide-HLA Class II Binding Prediction |
| 2197 | -- | 2207 | Betül Güvenç Paltun, Samuel Kaski, Hiroshi Mamitsuka. DIVERSE: Bayesian Data IntegratiVE Learning for Precise Drug ResponSE Prediction |
| 2208 | -- | 2218 | Zhongjian Cheng, Cheng Yan, Fang-Xiang Wu, Jianxin Wang 0001. Drug-Target Interaction Prediction Using Multi-Head Self-Attention and Graph Attention Network |
| 2219 | -- | 2230 | Dongyuan Li, Shuyao Zhang, Xiaoke Ma. Dynamic Module Detection in Temporal Attributed Networks of Cancers |
| 2231 | -- | 2240 | Chuang Liu 0001, Yao Dai, Keping Yu, Zi-Ke Zhang. Enhancing Cancer Driver Gene Prediction by Protein-Protein Interaction Network |
| 2241 | -- | 2251 | Yan Wang, Lei Zhang 0005, Xin Shu, Yangqin Feng, Zhang Yi 0001, Qing Lv. Feature-Sensitive Deep Convolutional Neural Network for Multi-Instance Breast Cancer Detection |
| 2252 | -- | 2263 | Nikhilanand Arya, Sriparna Saha 0001. Generative Incomplete Multi-View Prognosis Predictor for Breast Cancer: GIMPP |
| 2264 | -- | 2271 | Ana B. O. V. Silva, Eduardo J. Spinosa. Graph Convolutional Auto-Encoders for Predicting Novel lncRNA-Disease Associations |
| 2272 | -- | 2283 | Fadi N. Sibai, Ali El-Moursy, Abu Asaduzzaman, Sohaib Majzoub. Hardware Acceleration of the STRIKE String Kernel Algorithm for Estimating Protein to Protein Interactions |
| 2284 | -- | 2293 | Ning Wang, Jun Zhang, Bin Liu 0014. IDRBP-PPCT: Identifying Nucleic Acid-Binding Proteins Based on Position-Specific Score Matrix and Position-Specific Frequency Matrix Cross Transformation |
| 2294 | -- | 2304 | Xiaoqiang Xu, Ping Xuan, Tiangang Zhang, Bingxu Chen, Nan Sheng. Inferring Drug-Target Interactions Based on Random Walk and Convolutional Neural Network |
| 2305 | -- | 2312 | Meng Wang 0027. Inherent Nonlinear Distribution of High-Dimensional Genotypic Data Identified as a Possible Source of Confounding Factors in Population Structure Analysis |
| 2313 | -- | 2323 | Kevin B. Dsouza, Adam Y. Li, Vijay K. Bhargava, Maxwell W. Libbrecht. Latent Representation of the Human Pan-Celltype Epigenome Through a Deep Recurrent Neural Network |
| 2324 | -- | 2333 | Shahabeddin Sotudian, Ioannis Ch. Paschalidis. Machine Learning for Pharmacogenomics and Personalized Medicine: A Ranking Model for Drug Sensitivity Prediction |
| 2334 | -- | 2344 | Halil Ibrahim Kuru, Oznur Tastan, A. Ercument Cicek. MatchMaker: A Deep Learning Framework for Drug Synergy Prediction |
| 2345 | -- | 2355 | Pampa Howladar, Pranab Roy, Hafizur Rahaman 0001. MEDA Based Biochips: Detection, Prevention and Rectification Techniques for Cyberphysical Attacks |
| 2356 | -- | 2364 | Ji Hwan Moon, Sangseon Lee, Minwoo Pak, Benjamin Hur, Sun Kim. MLDEG: A Machine Learning Approach to Identify Differentially Expressed Genes Using Network Property and Network Propagation |
| 2365 | -- | 2376 | Keqin Peng, Chuantao Yin, Wenge Rong, Chenghua Lin, Deyu Zhou, Zhang Xiong 0001. Named Entity Aware Transfer Learning for Biomedical Factoid Question Answering |
| 2377 | -- | 2384 | Aleksandar Poleksic. Overcoming Sparseness of Biomedical Networks to Identify Drug Repositioning Candidates |
| 2385 | -- | 2398 | Qinlong Huang, Wei Yue 0004, Yixian Yang, Lixuan Chen. P2GT: Fine-Grained Genomic Data Access Control With Privacy-Preserving Testing in Cloud Computing |
| 2399 | -- | 2408 | Yueyue Wang, Xiujuan Lei, Cheng Lu, Yi Pan 0001. Predicting Microbe-Disease Association Based on Multiple Similarities and LINE Algorithm |
| 2409 | -- | 2419 | Zhaowei Wang, Qiguo Dai, Jinmiao Song, Xiaodong Duan, Hongpeng Yang, Ziqi Yang. Predicting RBP Binding Sites of RNA With High-Order Encoding Features and CNN-BLSTM Hybrid Model |
| 2420 | -- | 2430 | Ying-Lian Gao, Ming-Juan Wu, Jin-Xing Liu, Chun-Hou Zheng 0001, Juan Wang 0003. Robust Principal Component Analysis Based On Hypergraph Regularization for Sample Clustering and Co-Characteristic Gene Selection |
| 2431 | -- | 2441 | Yiqing Shen 0003, Jing Ke. Sampling Based Tumor Recognition in Whole-Slide Histology Image With Deep Learning Approaches |
| 2442 | -- | 2453 | Mengting Niu, Quan Zou 0001. SgRNA-RF: Identification of SgRNA On-Target Activity With Imbalanced Datasets |
| 2454 | -- | 2462 | Riku Walve, Simon J. Puglisi, Leena Salmela. Space-Efficient Indexing of Spaced Seeds for Accurate Overlap Computation of Raw Optical Mapping Data |
| 2463 | -- | 2470 | Jon X. Genty, Md. Rafiul Amin, Natalie D. Shaw, Elizabeth B. Klerman, Rose T. Faghih. Sparse Deconvolution of Pulsatile Growth Hormone Secretion in Adolescents |
| 2471 | -- | 2483 | Changyong Yu, Keming Mao, Yuhai Zhao, Cheng Chang, Guoren Wang. StLiter: A Novel Algorithm to Iteratively Build the Compacted de Bruijn Graph From Many Complete Genomes |
| 2484 | -- | 2498 | Qi Li 0016, Tijana Milenkovic. Supervised Prediction of Aging-Related Genes From a Context-Specific Protein Interaction Subnetwork |
| 2499 | -- | 2511 | Sara Sadat Aghamiri, Franck Delaplace. TaBooN Boolean Network Synthesis Based on Tabu Search |
| 2512 | -- | 2522 | Yanglan Gan, Ning Li, Cheng Guo, Guobing Zou, Jihong Guan, Shuigeng Zhou. TiC2D: Trajectory Inference From Single-Cell RNA-Seq Data Using Consensus Clustering |
| 2523 | -- | 2532 | Yu Liu, Ao Li 0001, Jiangshu Liu, Gang Meng, Minghui Wang. TSDLPP: A Novel Two-Stage Deep Learning Framework For Prognosis Prediction Based on Whole Slide Histopathological Images |
| 2533 | -- | 2544 | Zeeshan Abbas, Hilal Tayara, Kil To Chong. ZayyuNet - A Unified Deep Learning Model for the Identification of Epigenetic Modifications Using Raw Genomic Sequences |