| 1 | -- | 0 | Marie-France Sagot. EIC Editorial |
| 2 | -- | 13 | Megan Owen, J. Scott Provan. A Fast Algorithm for Computing Geodesic Distances in Tree Space |
| 14 | -- | 26 | Mohak Shah, Jacques Corbeil. A General Framework for Analyzing Data from Two Short Time-Series Microarray Experiments |
| 27 | -- | 35 | Sean Mauch, Mark A. Stalzer. Efficient Formulations for Exact Stochastic Simulation of Chemical Systems |
| 36 | -- | 44 | Dario Gasbarra, Sangita Kulathinal, Matti Pirinen, Mikko J. Sillanpää. Estimating Haplotype Frequencies by Combining Data from Large DNA Pools with Database Information |
| 45 | -- | 58 | Chandrajit L. Bajaj, Rezaul Alam Chowdhury, Vinay Siddahanavalli. F:::2:::Dock: Fast Fourier Protein-Protein Docking |
| 59 | -- | 68 | Joachim Giard, Patrice Rondao-Alface, Jean-Luc Gala, Benoit M. Macq. Fast Surface-Based Travel Depth Estimation Algorithm for Macromolecule Surface Shape Description |
| 69 | -- | 79 | Cinzia Pizzi, Pasi Rastas, Esko Ukkonen. Finding Significant Matches of Position Weight Matrices in Linear Time |
| 80 | -- | 93 | Razvan Andonie, Levente Fabry-Asztalos, Christopher B. Abdul-Wahid, Sarah Abdul-Wahid, Grant I. Barker, Lukas Magill. Fuzzy ARTMAP Prediction of Biological Activities for Potential HIV-1 Protease Inhibitors Using a Small Molecular Data Set |
| 94 | -- | 107 | Sushmita Mitra, Ranajit Das, Yoichi Hayashi. Genetic Networks and Soft Computing |
| 108 | -- | 121 | Wenxue Wang, Bijoy K. Ghosh, Himadri B. Pakrasi. Identification and Modeling of Genes with Diurnal Oscillations from Microarray Time Series Data |
| 122 | -- | 129 | Linkai Luo, Dengfeng Huang, Ling-Jun Ye, Qifeng Zhou, Guifang Shao, Hong Peng. Improving the Computational Efficiency of Recursive Cluster Elimination for Gene Selection |
| 130 | -- | 142 | Mehmet Tan, Mohammed Al-Shalalfa, Reda Alhajj, Faruk Polat. Influence of Prior Knowledge in Constraint-Based Learning of Gene Regulatory Networks |
| 143 | -- | 151 | Liuling Gong, Nidhal Bouaynaya, Dan Schonfeld. Information-Theoretic Model of Evolution over Protein Communication Channel |
| 152 | -- | 165 | Nathan A. Barker, Chris J. Myers, Hiroyuki Kuwahara. Learning Genetic Regulatory Network Connectivity from Time Series Data |
| 166 | -- | 181 | Delphine Ropers, Valentina Baldazzi, Hidde de Jong. Model Reduction Using Piecewise-Linear Approximations Preserves Dynamic Properties of the Carbon Starvation Response in Escherichia coli |
| 182 | -- | 193 | Yufeng Wu. New Methods for Inference of Local Tree Topologies with Recombinant SNP Sequences in Populations |
| 194 | -- | 205 | Ankit Agrawal, Xiaoqiu Huang. Pairwise Statistical Significance of Local Sequence Alignment Using Sequence-Specific and Position-Specific Substitution Matrices |
| 206 | -- | 216 | Rogier J. P. van Berlo, Dick de Ridder, Jean-Marc Daran, Pascale A. S. Daran-Lapujade, Bas Teusink, Marcel J. T. Reinders. Predicting Metabolic Fluxes Using Gene Expression Differences As Constraints |
| 217 | -- | 225 | Leo Lahti, Laura Elo, Tero Aittokallio, Samuel Kaski. Probabilistic Analysis of Probe Reliability in Differential Gene Expression Studies with Short Oligonucleotide Arrays |
| 226 | -- | 233 | Dukka B. Kc, Dennis R. Livesay. Topology Improves Phylogenetic Motif Functional Site Predictions |
| 234 | -- | 245 | Tamjidul Hoque, Madhu Chetty, Andrew Lewis, Abdul Sattar. Twin Removal in Genetic Algorithms for Protein Structure Prediction Using Low-Resolution Model |
| 246 | -- | 252 | Joaquim F. Pinto da Costa, Hugo Alonso, Luis Roque. A Weighted Principal Component Analysis and Its Application to Gene Expression Data |
| 253 | -- | 259 | Ping Li, James Lam. Disturbance Analysis of Nonlinear Differential Equation Models of Genetic SUM Regulatory Networks |
| 260 | -- | 265 | Cheng-Wei Luo, Ming-Chiang Chen, Yi-Ching Chen, Roger W. L. Yang, Hsiao-Fei Liu, Kun-Mao Chao. Linear-Time Algorithms for the Multiple Gene Duplication Problems |
| 266 | -- | 272 | Kezhi Mao, Wenyin Tang. Recursive Mahalanobis Separability Measure for Gene Subset Selection |
| 273 | -- | 281 | Vikram Krishnamurthy, Kai Yiu Luk. Semi-Markov Models for Brownian Dynamics Permeation in Biological Ion Channels |