| 513 | -- | 514 | Ion I. Mandoiu, Yi Pan, Alexander Zelikovsky. Guest Editors Introduction to the Special Section on Bioinformatics Research and Applications |
| 515 | -- | 522 | Chunfang Zheng, Qian Zhu, David Sankoff. Removing Noise and Ambiguities from Comparative Maps in Rearrangement Analysis |
| 523 | -- | 534 | Guillaume Blin, Cedric Chauve, Guillaume Fertin, Romeo Rizzi, Stéphane Vialette. Comparing Genomes with Duplications: A Computational Complexity Point of View |
| 535 | -- | 543 | Paola Bonizzoni, Gianluca Della Vedova, Riccardo Dondi, Guillaume Fertin, Raffaella Rizzi, Stéphane Vialette. Exemplar Longest Common Subsequence |
| 544 | -- | 552 | Jaime Davila, Sudha Balla, Sanguthevar Rajasekaran. Fast and Practical Algorithms for Planted (l, d) Motif Search |
| 553 | -- | 560 | Adrian Schneider, Gaston H. Gonnet, Gina Cannarozzi. SynPAM-A Distance Measure Based on Synonymous Codon Substitutions |
| 561 | -- | 571 | Srinath Sridhar, Kedar Dhamdhere, Guy E. Blelloch, Eran Halperin, R. Ravi, Russell Schwartz. Algorithms for Efficient Near-Perfect Phylogenetic Tree Reconstruction in Theory and Practice |
| 572 | -- | 582 | Jinmiao Chen, Narendra S. Chaudhari. Cascaded Bidirectional Recurrent Neural Networks for Protein Secondary Structure Prediction |
| 583 | -- | 595 | Huilin Xiong, Ya Zhang, Xue-wen Chen. Data-Dependent Kernel Machines for Microarray Data Classification |
| 596 | -- | 610 | Shahar Michal, Tor Ivry, Omer Cohen, Moshe Sipper, Danny Barash. Finding a Common Motif of RNA Sequences Using Genetic Programming: The GeRNAMo System |
| 611 | -- | 623 | Tara McIntosh, Sanjay Chawla. High Confidence Rule Mining for Microarray Analysis |
| 624 | -- | 634 | Ignacio Ponzoni, Francisco Azuaje, Juan Augusto, David Glass. Inferring Adaptive Regulation Thresholds and Association Rules from Gene Expression Data through Combinatorial Optimization Learning |
| 634 | -- | 647 | Nasimul Noman, Hitoshi Iba. Inferring Gene Regulatory Networks using Differential Evolution with Local Search Heuristics |
| 648 | -- | 704 | Shinn-Ying Ho, Chih-Hung Hsieh, Fu-Chieh Yu, Hui-Ling Huang. An Intelligent Two-Stage Evolutionary Algorithm for Dynamic Pathway Identification From Gene Expression Profiles |
| 661 | -- | 667 | Sergey Bereg, Yuanyi Zhang. Phylogenetic Networks Based on the Molecular Clock Hypothesis |
| 668 | -- | 680 | Jacek Blazewicz, Edmund K. Burke, Marta Kasprzak, Alexandr Kovalev, Mikhail Y. Kovalyov. Simplified Partial Digest Problem: Enumerative and Dynamic Programming Algorithms |
| 681 | -- | 692 | Rui Xu, Donald C. Wunsch II, Ronald Frank. Inference of Genetic Regulatory Networks with Recurrent Neural Network Models Using Particle Swarm Optimization |
| 693 | -- | 704 | Phaedra Agius, Barry Kreiswirth, Steve Naidich, Kristin Bennett. Typing Staphylococcus aureus Using the spa Gene and Novel Distance Measures |