CistromeFinder for ChIP-seq and DNase-seq data reuse - researchr publication related

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Hanfei Sun, Bo Qin, Tao Liu, Qixuan Wang, Jing Liu, Juan Wang, Xueqiu Lin, Yulin Yang, Len Taing, Prakash K. Rao, Myles Brown, Yong Zhang, Henry Long, X. Shirley Liu. CistromeFinder for ChIP-seq and DNase-seq data reuse. Bioinformatics, 29(10):1352-1354, 2013. [doi]

The following publications are possibly variants of this publication:

ChiLin: a comprehensive ChIP-seq and DNase-seq quality control and analysis pipelineQian Qin, Shenglin Mei, Qiu Wu, Hanfei Sun, Lewyn Li, Len Taing, Sujun Chen, Fugen Li, Tao Liu, Chongzhi Zang, Han Xu, Yiwen Chen, Clifford A. Meyer, Yong Zhang, Myles Brown, Henry Long. bmcbi, 17:404, 2016. [doi]

ChIPpeakAnno: a Bioconductor package to annotate ChIP-seq and ChIP-chip dataLihua J. Zhu, Claude Gazin, Nathan D. Lawson, Hervé Pagès, Simon M. Lin, David S. Lapointe, Michael R. Green. bmcbi, 11:237, 2010. [doi]

Automatic On-chip Memory Minimization for Data ReuseQiang Liu, George A. Constantinides, Konstantinos Masselos, Peter Y. K. Cheung. fccm 2007: 251-260 [doi]

A practical guide for DNase-seq data analysis: from data management to common applicationsYongjing Liu, Liangyu Fu, Kerstin Kaufmann, Dijun Chen, Ming Chen 0013. bib, 20(5):1865-1877, 2019. [doi]

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