Reproducible computational biology experiments with SED-ML - The Simulation Experiment Description Markup Language - researchr publication related

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Dagmar Waltemath, Richard Adams, Frank T. Bergmann, Michael Hucka, Fedor Kolpakov, Andrew K. Miller, Ion I. Moraru, David P. Nickerson, Sven Sahle, Jacky L. Snoep, Nicolas Le Novère. Reproducible computational biology experiments with SED-ML - The Simulation Experiment Description Markup Language. BMC Systems Biology, 5:198, 2011. [doi]

The following publications are possibly variants of this publication:

The simulation experiment description markup language (SED-ML): language specification for level 1 version 4Lucian P. Smith, Frank T. Bergmann, Alan Garny, Tomás Helikar, Jonathan R. Karr, David P. Nickerson, Herbert M. Sauro, Dagmar Waltemath, Matthias König 0003. jib, 18(3), 2021. [doi]

Simulation Experiment Description Markup Language (SED-ML) Level 1 Version 2Frank T. Bergmann, Jonathan Cooper, Nicolas Le Novère, David P. Nickerson, Dagmar Waltemath. jib, 12(2), 2015. [doi]

Simulation Experiment Description Markup Language (SED-ML) Level 1 Version 3 (L1V3)Frank T. Bergmann, Jonathan Cooper, Matthias König, Ion I. Moraru, David P. Nickerson, Nicolas Le Novère, Brett G. Olivier, Sven Sahle, Lucian P. Smith, Dagmar Waltemath. jib, 15(1), 2018. [doi]

SED-ED, a workflow editor for computational biology experiments written in SED-MLRichard R. Adams. bioinformatics, 28(8):1180-1181, 2012. [doi]

An Overview of CellML 1.1, a Biological Model Description LanguageAutumn A. Cuellar, Catherine M. Lloyd, Poul M. F. Nielsen, David P. Bullivant, David P. Nickerson, Peter J. Hunter. simulation, 79(12):740-747, 2003. [doi]

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