Abstract is missing.
- Predicting DNA-binding locations and orientation on proteins using knowledge-based learning of geometric propertiesChien-Chih Wang, Chien-Yu Chen. 3-8 [doi]
- Classification of genome-wide copy number variations and their associated SNP and gene networks analysisYang Liu, Yiu-Fai Lee, Michael K. Ng. 9-12 [doi]
- Prediction of low coverage prone regions for Illumina sequencing projects using a support vector machineZejun Zheng, Bertil Schmidt, Guillaume Bourque. 13-16 [doi]
- Protein-protein interaction prediction using desolvation energies and interface propertiesLuis Rueda, Sridip Banerjee, Md. Mominul Aziz, Mohammad Raza. 17-22 [doi]
- Prediction of DNA-binding protein based on alpha shape modelingWeiqiang Zhou, Hong Yan. 23-28 [doi]
- Gene cluster profile vectors: A novel method to infer functional coupling using both gene proximity and co-occurrence profilesVikas Rao Pejaver, Sun Kim. 29-34 [doi]
- Phylogenetic reconstruction with gene rearrangements and gene lossesYiWei Zhang, Fei Hu, Jijun Tang. 35-38 [doi]
- Detecting SNPs-disease associations using Bayesian networksBing Han, Xue-wen Chen. 39-42 [doi]
- Accurate prediction of ATP-binding residues using sequence and sequence-derived structural descriptorsKe Chen 0003, Marcin J. Mizianty, Lukasz A. Kurgan. 43-48 [doi]
- Unsupervised integration of multiple protein disorder predictorsPing Zhang, Zoran Obradovic. 49-52 [doi]
- Sequence and structural features of binding site residues in protein-protein complexesM. Michael Gromiha, N. Saranya, Samuel Selvaraj, B. Jayaram, Kazuhiko Fukui. 53-56 [doi]
- Structural parsimony: Reductions in sequence spaceRoberto Blanco. 57-61 [doi]
- Protein-protein interaction prediction via Collective Matrix FactorizationQian Xu, Evan Wei Xiang, Qiang Yang. 62-67 [doi]
- Characterization of structural features for small regulatory RNAs in Escherichia coli genomesShu-Yun Le, Bruce A. Shapiro. 68-72 [doi]
- Prediction of Protein-RNA interaction site using SVM-KNN algorithm with spatial informationWei Chen, Shao-Wu Zhang, Yongmei Cheng, Quan Pan. 73-76 [doi]
- Enhanced reference guided assemblyFederica Cattonaro, Alberto Policriti, Francesco Vezzi. 77-80 [doi]
- A possible mutation that enables H1N1 influenza a virus to escape antibody recognitionT. T. Su Chinh, Stephanus Daniel Handoko, Chee Keong Kwoh, Christian Schönbach, Xiaoli Li. 81-84 [doi]
- CEO a cloud epistasis computing model in GWASZhengkui Wang, Yue Wang, Kian-Lee Tan, Limsoon Wong, Divyakant Agrawal. 85-90 [doi]
- A new perspective of integrative genome-wide association analysis considering trans eSNP effectJunho Kim, Doheon Lee. 91-94 [doi]
- MetaPhyler: Taxonomic profiling for metagenomic sequencesBo Liu, Theodore Gibbons, Mohammadreza Ghodsi, Mihai Pop. 95-100 [doi]
- MiRNAs as promising phylogenetic markers for inferring deep metazoan phylogeny and in support of Olfactores hypothesisQingqing Cai, Xiaoyan Zhang, Zoufeng Li. 101-104 [doi]
- alns - A searchable and filterable sequence alignment formatRoss K. K. Leung, Stephen Kwok-Wing Tsui. 105-108 [doi]
- Protein 8-class secondary structure prediction using Conditional Neural FieldsZhiyong Wang, Feng Zhao, Jian Peng, Jinbo Xu. 109-114 [doi]
- Truncation of protein sequences for fast profile alignment with application to subcellular localizationMan-Wai Mak, Wei Wang, Sun-Yuan Kung. 115-120 [doi]
- CAMBer: An approach to support comparative analysis of multiple bacterial strainsMichal Wozniak, Limsoon Wong, Jerzy Tiuryn. 121-126 [doi]
- Template-based scoring functions for visualizing biological insights of H-2K:::b:::-peptide-TCR complexesI.-Hsin Liu, Yu-Shu Lo, Jinn-Moon Yang. 127-132 [doi]
- An algorithm for mapping short reads to a dynamically changing genomic sequenceTomás Flouri, Jan Holub, Costas S. Iliopoulos, Solon P. Pissis. 133-136 [doi]
- A parallel multi-objective ab initio approach for protein structure predictionDavid Becerra, Angelica Sandoval, Daniel Restrepo-Montoya, Luis F. Niño. 137-141 [doi]
- NetLoc: Network based protein localization prediction using protein-protein interaction and co-expression networksM. Mondal Ananda, Jianjun Hu. 142-148 [doi]
- Probabilistic topic modeling for genomic data interpretationXin Chen, Xiaohua Hu, Xiajiong Shen, Gail Rosen. 149-152 [doi]
- Identification and quantification of abundant species from pyrosequences of 16S rRNA by consensus alignmentYuzhen Ye. 153-157 [doi]
- Predicting ligand binding residues using multi-positional correlations and kernel canonical correlation analysisAlvaro J. González, Li Liao, Cathy Wu. 158-163 [doi]
- Detection of splicing events and multiread locations from RNA-seq data based on a geometric-tail (GT) distribution of intron lengthShao-Ke Lou, Jing-Woei Li, Hao Qin, Aldrin Kay-Yuen Yim, Leung-Yau Lo, Bing Ni, Kwong-Sak Leung, Stephen Kwok-Wing Tsui, Ting-Fung Chan. 164-170 [doi]
- Evaluation of short read metagenomic assemblyAnveshi Charuvaka, Huzefa Rangwala. 171-178 [doi]
- A probabilistic framework for inferring ancestral genomic ordersJian Ma. 179-184 [doi]
- An accurate classification of native and non-native protein-protein interactions using supervised and semi-supervised learning approachesNan Zhao, Bin Pang, Chi-Ren Shyu, Dmitry Korkin. 185-189 [doi]
- Fuzzy C-means method with empirical mode decomposition for clustering microarray dataYan-fei Wang, Zu-Guo Yu, Vo Anh. 192-197 [doi]
- Overcoming drug resistance by co-targetingMarzieh Ayati, Golnaz Taheri, Shahriar Arab, Limsoon Wong, Changiz Eslahchi. 198-202 [doi]
- SoyMetDB: The soybean metabolome databaseTrupti Joshi, Qiuming Yao, D. Franklin Levi, Laurent Brechenmacher, Babu Valliyodan, Gary Stacey, Henry Nguyen, Dong Xu. 203-208 [doi]
- Machine learning approaches for the investigation of features beyond seed matches affecting miRNA bindingCen Gao, Jing Li. 209-213 [doi]
- A non-parameter Ising model for network-based identification of differentially expressed genes in recurrent breast cancer patientsXumeng Li, Frank Alex Feltus, Xiaoqian Sun, James Zijun Wang, Feng Luo. 214-217 [doi]
- Utilizing Cox regression model to assess the relations between predefined gene sets and the survival outcome of lung adenocarcinomaJo-Yang Lu, Eric Y. Chuang, Chuhsing Kate Hsiao, Mong-Hsun Tsai, Liang-Chuan Lai, Pei-Chun Chen. 218-221 [doi]
- Iterative correction of suppressed peptide profiles from FTMS measurementsXuepo Ma, Travis J. Hestilow, Jian Cui, Jianqiu Zhang. 222-227 [doi]
- Outcomes of gene association analysis of cancer microarray data are impacted by pre-processing algorithmsN. Baskaran, Chee Keong Kwoh, M. Hui Kam. 228-233 [doi]
- Peptide charge state determination of tandem mass spectra from low-resolution collision induced dissociationJin-Hong Shi, Fang-Xiang Wu. 234-239 [doi]
- Finding optimal control policy in Probabilistic Boolean Networks with hard constraints by using integer programming and dynamic programmingXi Chen, Tatsuya Akutsu, Takeyuki Tamura, Wai-Ki Ching. 240-246 [doi]
- Semi-supervised learning protein complexes from protein interaction networksLei Shi, Aidong Zhang. 247-252 [doi]
- Discovering functional gene pathways associated with cancer heterogeneity via sparse supervised learningShuichi Kawano, Teppei Shimamura, Atsushi Niida, Seiya Imoto, Rui Yamaguchi, Masao Nagasaki, Ryo Yoshida, Cristin G. Print, Satoru Miyano. 253-258 [doi]
- Prediction of human protein kinase substrate specificitiesJavad Safaei, Ján Manuch, Arvind Gupta, Ladislav Stacho, Steven Pelech. 259-264 [doi]
- Sparse nonnegative matrix factorization with the elastic netWeixiang Liu, Songfeng Zheng, Sen Jia, LinLin Shen, Xianghua Fu. 265-268 [doi]
- Unsupervised discovery of fuzzy patterns in gene expression dataGene P. K. Wu, Keith C. C. Chan, Andrew K. C. Wong, Bin Wu. 269-273 [doi]
- A two-stage machine learning approach for pathway analysisWei Zhang, Scott J. Emrich, Erliang Zeng. 274-279 [doi]
- Decomposing PPI networks for complex discoveryGuimei Liu, Chern Han Yong, Limsoon Wong, Hon Nian Chua. 280-283 [doi]
- Concurrent analysis of copy number variations and expression profiles to identify genes associated with tumorigenesis and survival outcome in lung adenocarcinomaTzu-Pin Lu, Liang-Chuan Lai, Chuhsing Kate Hsiao, Pei-Chun Chen, Mong-Hsun Tsai, Eric Y. Chuang. 284-289 [doi]
- Ontology integration to identify protein complex in protein interaction networksBo Xu, Hongfei Lin, Zhihao Yang. 290-295 [doi]
- A procedure for identifying master regulators in conjunction with network screening and inferenceShigeru Saito, Xinrong Zhou, Taejeong Bae, Sunghoon Kim, Katsuhisa Horimoto. 296-301 [doi]
- Stochastic gene expression modeling with hill function for switch-like gene responsesHaseong Kim, Erol Gelenbe. 302-307 [doi]
- Multi-objective evolutionary algorithms based Interpretable Fuzzy models for microarray gene expression data analysisZhenyu Wang, Vasile Palade. 308-313 [doi]
- Correlating CpG islands, motifs, and sequence variants in human chromosome 21Leah Spontaneo, Nick Cercone. 319-322 [doi]
- A supervised learning approach to the unsupervised clustering of genesAndrew K. Rider, Geoffrey Siwo, Scott J. Emrich, Michael T. Ferdig, Nitesh V. Chawla. 322-328 [doi]
- Structure identification and parameter estimation of biological s-systemsLi-Zhi Liu, Fang-Xiang Wu, Li-Li Han, Wen-Jun Zhang. 329-334 [doi]
- An Iterated Conditional Modes solution for sparse Bayesian factor modeling of transcriptional regulatory networksJia Meng, Jianqiu Zhang, Yidong Chen, Yufei Huang. 335-340 [doi]
- Global analysis of miRNA target genes in colon rectal cancerMeeta Pradhan, Lakenvia Ledford, Yogesh Pandit, Mathew Palakal. 341-345 [doi]
- A new method for alignment of LC-MALDI-TOF dataZhiqun Tang, Lihua Zhang, Amrita K. Cheema, Habtom W. Ressom. 346-351 [doi]
- Module-based biomarker discovery in breast cancerYuji Zhang, Jianhua Jason Xuan, Robert Clarke, Habtom W. Ressom. 352-356 [doi]
- A graph-based elastic net for variable selection and module identification for genomic data analysisZheng Xia, Xiaobo Zhou, Wei Chen, Chunqi Chang. 357-362 [doi]
- Cis-regulatory module detection using constraint programmingTias Guns, Hong Sun, Kathleen Marchal, Siegfried Nijssen. 363-368 [doi]
- A generalized sequence pattern matching algorithm using complementary dual-seedingBing Ni, Leung-Yau Lo, Kwong-Sak Leung. 369-372 [doi]
- Integrated analysis of the various types of microarray data using linear-mixed effects modelsSung-Gon Yi, Taesung Park. 373-379 [doi]
- A dynamic qualitative probabilistic network approach for extracting gene regulatory network motifsZina M. Ibrahim, Alioune Ngom, Ahmed Y. Tawfik. 380-385 [doi]
- A parameterless automatic spot detection method for cDNA microarray imagesIman Rezaeian, Luis Rueda. 388-392 [doi]
- An accurate, automatic method for markerless alignment of electron tomographic imagesQi Chu, Fa Zhang, Kai Zhang, Xiaohua Wan, Mingwei Chen, Zhiyong Liu. 393-396 [doi]
- Spatially constrained fuzzy hyper-prototype clustering with application to brain tissue segmentationJin Liu, Tuan D. Pham, Wei Wen, Perminder S. Sachdev. 397-400 [doi]
- Exploring matrix factorization techniques for significant genes identification of microarray datasetWei Kong, Xiaoyang Mou, Xiaohua Hu. 401-405 [doi]
- Hybrid SVM/CART classification of pathogenic species of bacterial meningitis with surface-enhanced Raman scatteringChung-Yueh Huang, Tsung-Heng Tsai, Bing-Cheng Wen, Chia-Wen Chung, Yung-Jui Li, Ya-Ching Chuang, Wen-Jie Lin, Li-Li Li, Juen-Kai Wang, Yuh-Lin Wang, Chi-Hung Lin, Da-Wei Wang. 406-409 [doi]
- Improved mammographic mass retrieval performance using multi-view informationWei Liu, Weidong Xu, Lihua Li, Shuang Li, Huanping Zhao, Juan Zhang. 410-415 [doi]
- A fast and noise-adaptive rough-fuzzy hybrid algorithm for medical image segmentationArpit Srivastava, Abhinav Asati, Mahua Bhattacharya. 416-421 [doi]
- Sparse canonical correlation analysis applied to fMRI and genetic data fusionDavid Boutte, Jingyu Liu. 422-426 [doi]
- Solving training issues in the application of the wavelet transform to precisely analyze human body acceleration signalsE. Martin. 427-432 [doi]
- A Naïve Bayes classifier for differential diagnosis of Long QT Syndrome in childrenLong Qu, Victoria L. Vetter, Geoffrey L. Bird, Haijun Qiu, Peter S. White. 433-437 [doi]
- Non-negative matrix and tensor factorization based classification of clinical microarray gene expression dataYifeng Li, Alioune Ngom. 438-443 [doi]
- Improving robustness of gene ranking by resampling and permutation based score correction and normalizationFeng Yang, K. Z. Mao. 444-449 [doi]
- Autoregressive modeling of DNA features for short exon recognitionNancy Yu Song, Hong Yan. 450-455 [doi]
- Hierarchical decomposition of vessel skeletons for graph creation and feature extractionKlaus Drechsler, Cristina Oyarzun Laura. 456-461 [doi]
- Semi-supervised feature learning from clinical textZhuoran Wang, John Shawe-Taylor, Anoop Shah. 462-466 [doi]
- Predicting human microRNA-disease associations based on support vector machineQinghua Jiang, Guohua Wang, Tianjiao Zhang, Yadong Wang. 467-472 [doi]
- A sparse regulatory network of copy-number driven expression reveals putative breast cancer oncogenesYinyin Yuan, Christina Curtis, Carlos Caldas, Florian Markowetz. 473-478 [doi]
- Network-based identification of smoking-associated gene signature for lung cancerYing-Wooi Wan, Changchang Xiao, Nancy Lan Guo. 479-484 [doi]
- Detection and application of CagA sequence markers for assessing risk factor of gastric cancer caused by Helicobacter pyloriChao Zhang, Shunfu Xu, Dong Xu. 485-488 [doi]
- Discovering negative correlated gene sets from integrative gene expression data for cancer prognosisTao Zeng, Xuan Guo, Juan Liu. 489-492 [doi]
- A gene ranking method using text-mining for the identification of disease related genesHyungmin Lee, Miyoung Shin, Munpyo Hong. 493-498 [doi]
- A novel reinforcement learning framework for online adaptive seizure predictionShouyi Wang, Wanpracha Art Chaovalitwongse, Stephen Wong. 499-504 [doi]
- Metabolomic profiling for biomarker discovery in pancreatic cancerPrabhjit Kaur, Kathryn Sheikh, Alexander Kirilyuk, Ksenia Kirilyuk, Habtom W. Ressom, Amrita K. Cheema, Bhaskar Kallakury. 505-509 [doi]
- Intracranial pressure level prediction in traumatic brain injury by extracting features from multiple sources and using machine learning methodsWenAn Chen, Charles Cockrell, Kevin Ward, Kayvan Najarian. 510-515 [doi]
- Exploitation of 3D Stereotactic Surface Projection for automated classification of Alzheimer s disease according to dementia levelsMurat Seckin Ayhan, Ryan G. Benton, Vijay V. Raghavan, Suresh K. Choubey. 516-519 [doi]
- Gene selection using 1-norm regularization for multi-class microarray dataXiaofei Nan, Nan Wang, Ping Gong, Chaoyang Zhang, Yixin Chen, Dawn Wilkins. 520-524 [doi]
- Eigenspectra, a robust regression method for multiplexed Raman spectra analysisShuo Li, Jean Gao, James O. Nyagilo, Digant P. Dave. 525-530 [doi]
- A new method for measuring the semantic similarity on gene ontologyYing Shen, Shaohong Zhang, Hau-San Wong. 533-538 [doi]
- seGOsa: Software environment for gene ontology-driven similarity assessmentHuiru Zheng, Francisco Azuaje, Haiying Wang. 539-542 [doi]
- Examining the sublineage structure of Mycobacterium tuberculosis complex strains with multiple-biomarker tensorsCagri Ozcaglar, Amina Shabbeer, Scott Vandenberg, Bülent Yener, Kristin P. Bennett. 543-548 [doi]
- Two-stage clustering based effective sample selection for classification of pre-miRNAsPing Xuan, Maozu Guo, Lei Lei Shi, Jun Wang, Xiaoyan Liu, Wenbin Li, Yingpeng Han. 549-552 [doi]
- Biomedical concept extraction using concept graphs and ontology-based mappingSaid Bleik, Wei Xiong, Yiran Wang, Min Song. 553-556 [doi]
- Identification of critical location on a microstructural bone networkTaehyong Kim, Jaehan Koh, Kang Li, Murali Ramanathan, Aidong Zhang. 557-562 [doi]
- An automatic procedure to search highly repetitive sequences in genome as fluorescence in situ hybridization probes and its application on Brachypodium distachyonQiwei Li, Tong Liang, Xiaodan Fan, Chunhui Xu, Weichang Yu, Shuo-Yen Robert Li. 563-568 [doi]
- Exploratory analysis of the BioAssay Network with implications to therapeutic discoveryJintao Zhang, Gerald H. Lushington, Jun Huan. 569-572 [doi]
- Link-based cluster ensembles for heterogeneous biological data analysisNatthakan Iam-on, Simon Garrett, Chris Price, Tossapon Boongoen. 573-578 [doi]
- FluRF, an automated flu virus reassortment finder based on phylogenetic treesAlisa Yurovsky, Bernard M. E. Moret. 579-584 [doi]
- Decomposing protein interactome networks by graph entropyHao Lian, Chengsen Song, Young-Rae Cho. 585-589 [doi]
- NWE: Node-weighted expansion for protein complex prediction using random walk distancesOsamu Maruyama, Ayaka Chihara. 590-594 [doi]
- Ranking SVM for multiple kernels output combination in protein-protein interaction extraction from biomedical literatureZhihao Yang, Yuan Lin, Jiajin Wu, Nan Tang, Hongfei Lin, Yanpeng Li. 595-598 [doi]
- Concurrent analysis of copy number variation and gene expression: Application in paired non-smoking female lung cancer patientsJung-Chih Chang, Tzu-Pin Lu, Eric Y. Chuang, Liang-Chuan Lai, Mong-Hsun Tsai, Chuhsing Kate Hsiao, Pei-Chun Chen. 599-602 [doi]
- Robust hidden semi-Markov modeling of array CGH dataJiarui Ding, Sohrab P. Shah. 603-608 [doi]
- Computational modeling of phagocyte transmigration during biomaterial-mediated foreign body responsesMingon Kang, Jean X. Gao, Liping Tang. 609-612 [doi]
- Rex: A toolset for reproducing software experimentsSomu Perianayagam, Gregory R. Andrews, John H. Hartman. 613-617 [doi]
- A comparative study of two matrix factorization methods applied to the classification of gene expression dataVladimir Nikulin, Tian-Hsiang Huang, Geoffrey J. McLachlan. 618-621 [doi]
- Time- and space-efficient maximal repeat finding using the burrows-wheeler transform and wavelet treesM. Oguzhan Külekci, Jeffrey Scott Vitter, Bojian Xu. 622-625 [doi]
- IsoKEGG: A logic based system for querying biological pathways in KEGGKazi Zakia Sultana, Anupam Bhattacharjee, Hasan M. Jamil. 626-631 [doi]
- Feature selection for graph kernelsMehmet Tan, Faruk Polat, Reda Alhajj. 632-637 [doi]
- Toward automatically drawn metabolic pathway atlas with peripheral node abstraction algorithmMyungha Jang, Arang Rhie, Hyun Seok Park. 638-642 [doi]
- An Evolutionary Monte Carlo algorithm for identifying short adjacent repeats in multiple sequencesJin Xu, Qiwei Li, Xiaodan Fan, Victor O. K. Li, Shuo-Yen Robert Li. 643-648 [doi]
- Gene expression rule discovery with a multi-objective neural-genetic hybridEd Keedwell, Ajit Narayanan. 649-656 [doi]
- Represented indicator measurement and corpus distillation on focus species detectionChih-Hsuan Wei, Hung-Yu Kao. 657-662 [doi]
- PSI-RA: A parallel sparse index for read alignment on genomesM. Oguzhan Külekci, Wing-Kai Hon, Rahul Shah, Jeffrey Scott Vitter, Bojian Xu. 663-668 [doi]
- Exploring a multi-source fusion approach for genomics information retrievalQinmin Vivian Hu, Jimmy Xiangji Huang, Jun Miao. 669-672 [doi]
- GPU-based triangulation of the van der Waals surfaceSérgio Dias, Abel Gomes. 673-676 [doi]
- Selecting informative genes by Lasso and Dantzig selector for linear classifiersSongfeng Zheng, Weixiang Liu. 677-680 [doi]
- Scalable, updatable predictive models for sequence dataNeeraj Koul, Ngot Bui, Vasant Honavar. 681-685 [doi]
- Computational prediction of toxicityMeenakshi Mishra, Hongliang Fei, Jun Huan. 686-691 [doi]
- A relevance-novelty combined model for genomics search result diversificationXiaoshi Yin, Zhoujun Li, Jimmy Xiangji Huang, Xiaohua Hu. 692-695 [doi]
- Gene clustering by structural prior based local factor analysis model under Bayesian Ying-Yang harmony learningLei Shi, Shikui Tu, Lei Xu. 696-699 [doi]
- An ensemble method for querying gene expression compendia with experimental listsRiet De Smet, Kathleen Marchal. 3141-318 [doi]