Table of Contents

• A Dynamic Programming Approach to the Study of Protein Sequence VariationsArthur Chou, Shan Lu. 3-8
• An Efficient Algorithm for the Longest Pattern Subsequence ProblemXiaodong Wang, Lei Wang, Yingjie Wu. 9-14
• A modified Dirichlet process mixture model for clustering phosphopeptides based on their response to anti-cancer drug perturbationBabak Shahbaba, Eva Prenosil, Anjali Jain, Sylvia K. Plevritis. 17-22
• Identification of Condition-specific Regulatory Modules by Multi-level Motif and mRNA Expression AnalysisLi Chen, Jianhua Xuan, Rebecca B. Riggins, Yue Wang, Eric P. Hoffman, Robert Clarke. 23-28
• Word-Based Characterization of the Bidirectional Promoters from the Human DNA-Repair PathwayJens Lichtenberg, Edwin Jacox, Mary Qu Yang, Laura Elnitski, Lonnie R. Welch. 29-33
• Discovery of Regulatory Elements in Oomycete OrthologsJens Lichtenberg, Paul Morris, Klaus Ecker, Lonnie R. Welch. 34-38
• Stochastic Stability Analysis of the Heat Shock Response in E. ColiAnke Meyer-Bäse, Fabian J. Theis. 39-42
• Mitochondrial Stress-induced Genes and Pathways Changes in Human Hepatoma CellsChun-Ju Chang, Pen-Hui Yin, Chun-Hui Wang, Chin-Wen Chi, Yau-Huei Wei, Hsin-Chen Lee. 43-49
• An Efficient Intelligent Binary Tree for Alternative Splice Site DetectionMinseo Park. 50-54
• Optimize Observational Time Points to Maximize the Inferability of Gene NetworksFrank Emmert-Streib, Andre Ribeiro. 55-60
• Relating Microbial Community Structure to a Dominant Environmental Variable in a Complex Environment: An Example from a Chromium Contaminated SiteAnthony Palumbo, Jack Schryver, Susan Pfiffner, Terence Marsh, Craig Brandt. 61-67
• Genomic Scale Reconstruction of Gene Regulatory Networks from Microarray DataKenneth Sundberg, Daniel Ence, Daniel Wilcox, Quinn Snell, Mark J. Clement. 68-71
• Inferring functional linkage from residue level co-evolution informationRoger A. Craig, Keyur Malaviya, Krishna Balasubramanian, Li Liao. 75-80
• Incomparability of Results Between Phylogenetic Search ProgramsKenneth Sundberg, Hyrum Carroll, Quinn Snell, Mark J. Clement. 81-84
• An Integrative Approach to Phylogenetic InferencePinghao Wang, Bing Bing Zhou, Chen Wang, Zhen Zhao, Albert Y. Zomaya. 85-90
• Major factors of protein evolution revealed by eigenvalue decomposition analysisXin Liu, Li-Mei Zhang, Jun Yin, Ya-Pu Zhao. 91-97
• Computing the Mixture Distance Between Mixture TreesChen-Hui Lin, Justie Juan. 98-103
• A Multi-criteria Phylogenetic Reconstruction MethodPinghao Wang, Bing Bing Zhou, Chen Wang, Pang Bo, Albert Y. Zomaya. 104-110
• Does Nucleotide Compositional Bias Explain Amino Acid Usage in Viral Genomes?Rishi Mukhopadhyay, John Rose. 111-115
• Tracking the Dimensional Evolution of Gene Expression BiclustersLiviu Badea. 116-121
• Validation of the Human Alu phylogeny: a whole-genome analysisSridhar Ramachandran, Travis E. Doom. 122-128
• Liver Gene Expression Profile of Mice Treated with Acrylamide in Drinking WaterNan Mei, Mugimane G. Manjanatha, Mizuo Azuma, Lea P. McDaniel, Stacey L. Dial, Jo Tseng, Wayne Liao, Lei Guo. 131-137
• Bivariate Estimator for cDNA Microarray Images Using Complex WaveletsTamanna Howlader, Yogendra P. Chaubey. 138-144
• Majority Logic Decoding for Probe-level Microarray DataHumberto Ortiz-Zuazaga, Tim Tully, Oscar Moreno. 145-150
• BISOFT: A Semi-Fuzzy Approach For BiClustering Gene Expression DataHossam S. Sharara, Mohamed A. Ismail. 151-157
• PC-Relief-F Feature Filtering Algorithm: Application and Utilization in Selecting Informative Genes from Microarray DataSapana Kumari, Huann-Sheng Chen. 158-163
• Discoveries in shRNA DesignHong Zhou, Xiao Zeng, Joseph Manthey. 164-169
• Analysis of Correlations between Genes and Triads of Transcription Factors Using Microarray Expression ProfilesEdward Salinas, Amitava Karmaker. 170-174
• Toward a Combinatorial Approach to the Sample Size Problem in Multiple-treatment Microarray StudiesVinhthuy Phan, E. Olusegun George, Quynh Tran, Thomas Sutter. 175-181
• Time Series Data Mining Algorithms for Identifying Short RNA in Arabidopsis thalianaAnthony Bagnall, Simon Moxon, David J. Studholme, Vincent Moulton. 182-188
• Exploring Transcriptional Modules Through Integrative Gene Clustering Guided by Transcription Factor Binding InformationTing Gong, Jianhua Xuan, Rebecca B. Riggins, Yue Wang, Eric P. Hoffman, Robert Clarke. 191-197
• Algorithms for Designing the Minimal Set of Multiplexed Degenerate Universal Tagged Primers for RNA Virus DetectionJian Song, Jason D. Gans, Murray Wolinsky, Po-E Li, Emily Curd, Chris Detter, Hong Cai. 198-202
• Mining Intronic Sequence Features of Splice Sites with Depth-Breadth Fused Codon AnalysesSing-Wu Liou, Yin-Fu Huang. 203-209
• Stochastic Context Free Grammar for RNA Modeling: An OverviewMuhammed Al-Mulhem. 210-213
• Mutual Information Measure for Distinguishing Coding and Non-Coding DNA SequencesJohn Rose, Achraf El Allali. 214-219
• GO Based Hierarchical Framework for Inference of Gene Regulatory NetworksKumar Abhishek, Harish Karnick. 220-225
• Gene Clustering on the Unit Hypersphere with the Spherical K-Means Algorithm: Coping with Extremely Large Number of Local OptimaXuan Vinh Nguyen. 226-233
• Data Mining Pathogen Genomes Using GeneOrder and CoreGenes: Gene Order, Synteny, and ProteomesPadmanabhan Mahadevan, Donald Seto. 234-240
• Use of Nucleotide Genomic Signals in the Analysis of Variability and Inserts in Prokaryote GenomesPaul Dan Cristea, Rodica Tuduce. 241-247
• Promoter Prediction using Horspool s AlgorithmUma Devi Tatavarthi, V. Nageswara Rao Padmanabhuni, Allam Appa Rao. 248-250
• Fuzzy C-Means Algorithm for Clustering Protein SequencesDevi Golaganilavanya, Rao Allamappa, A. Damodaram, G. R. Sridhar, G. Jaya Suma. 251-255
• E.coli Promoter Recognition Through WaveletsT. Sobha Rani, Raju S. Bapi. 256-262
• On the Role of a Nonlinear Stress-Strain Relation in Brain TraumaIgor Szczyrba, Martin Burtscher, Rafal Szczyrba. 265-271
• A Federative Approach For a Virtual Community In Elderly Care: A Different Way In ECareGiovanni Rinaldi, Mike Martin, Massimo Busuoli. 272-278
• Modified Detrended Fluctuation Analysis Method in Depth of Anesthesia Assessment ApplicationTai Nguyen-Ky, Peng (Paul) Wen, Yan Li. 279-284
• Combined Correlation-Proximity Test for Breast Cancer and FibroadenomatosisRoman Andrushkiw, Dmitry Klyushin, Lyudmila Ostapchenko, Yuriy Petunin, Ivan Sirenko, Natalya Boroday. 285-288
• Observation and Reporting Experiment Undertaken in the Development of an Image Desription Language for the Reporting by Pathologists of the Grading of CancersJon Plumley, Richard Gatward, Alison Todman, Raouf Naguib, Mark Bennett. 289-293
• MATCH: A Decision Support System for Integration of Biomedical DataSally Atkinson, Babak Akhgar, Jawed I. A. Siddiqi, Alicia Grudz, Alexandra Ihatowicz, Massimo Gulisano, Lorenzo Memeo, Peter Scriven. 294-297
• Stochastic pi-Calculus Models of the Molecular Bases of Parkinson s DiseasePaola Lecca. 298-304
• Laryngeal Pathology Detection by LPC and LPC-based Cepstral AnalysisSilvana Cunha Costa, Benedito G. Aguiar Neto, Joseana M. Fechine. 305-310
• Recirculation in Vascular Access for Hemodialysis Treatment by Employ the on_line Mesuring Sytem of Urea in BloodGustavo Adolfo Martinez Chavez. 311-314
• CellMiner: A Database Tool for the NCI-60 Cancer Cell LinesUma T. Shankavaram, Sudhir Varma, David W. Kane, Margot Sunshine, Krishna Chary, William C. Reinhold, John N. Weinstein. 315-323
• Correlation Algorithm for Cytogenetic Method of Breast Cancer DiagnosisRoman Andrushkiw, Yuriy Petunin, Dmitry Klyushin, Yulia Lozovskaya, Andrey Romanov. 324-327
• Two Dimensional Modeling and Computer Simulation of Tumor GrowthLoretta Ichim, Radu Dobrescu, Catalin Vasilescu. 328-333
• Data Mining of Capacitance Relaxation Phenomena in classifying Breast Cancer CellTapas Kumar Basak, Subramani Murugappan, Velanganny Cyrilraj, Thiruvengadam Ramanujam, Thavasi anantham Ravi. 334-339
• Using Simple Computer Exercises to Assist in the Rehabilitation of Stroke Patients : A PrototypeGillian Jones, Gillian Pearce, Matthew Smith. 340-344
• Vital Medical Imaging Multimode Cyto-Histo-Anatomical Computing SystemsEl Menouar Salah, Braham Salah, Abd Elkrim Salah. 345-351
• An algorithm for estimation of abdominal pressure by electromyographyKeo-Sik Kim, Yang Su An, Jeong-Hwan Seo, Chul-Gyu Song. 352-357
• Analysis of Goldbeter-Koshland Switch Using the Chemical Master EquationJingwei Zhang, Layne Watson, Masha Sosonkina, Yang Cao. 361-367
• Probabilistic-Based Mixture Regression Models for Multi-Class Alignment of LC-MS DataGetachew Befekadu, Mahlet Tadesse, Habtom W. Ressom. 368-373
• Identifying Factors that Improve the Predictive Quality of BMI for Health StatusM. L. D. Ponce, J. Ding, Mohammad H. N. Tabrizi. 374-378
• Application of Framelet Transform to the MS-based Proteomics Data PreprocessingHaihui Wang, Yijun Chang, Pan Du. 379-382
• Efficient Sparse Dynamic Programming for the Merged LCS ProblemYung-Hsing Peng, Chang-Biau Yang, Chiou-Ting Tseng, Chiou-Yi Hor. 383-388
• Evaluation Of The Deformity Of Cleft Nose Based On Statistical And Neural NetworkXi Wang, D.-W. Kim, Kil To Chong. 389-395
• A Group Monitoring Wireless System for Health Care MonitoringAlessandro Brawerman, Mauricio Perretto. 396-400
• Reverse Engineering Module Networks by PSO-RNN Hybrid ModelingYuji Zhang, Jianhua Xuan, Benildo de los Reyes, Robert Clarke, Habtom W. Ressom. 401-407
• Exact Modeling of Cardiovascular System Using Lumped MethodOmid Ghasemalizadeh, Mohammad Reza Mirzaee, Bahar Firoozabadi, Kamran Hassani. 408-417
• An improvement method based on OrthoMCL by adding the domain informationXinyu Que, Fa Zhang, Shengzhong Feng Feng, Bo Yuan, Zhiyong Liu. 418-423
• Significance-Testing of Periodogram for Short Time SeriesAndrzej Kudlicki, Maga Rowicka, Zbyszek Otwinowski. 424-430
• Stochastic Simulation Algorithms for Chemical ReactionsTae-Hyuk Ahn, Yang Cao, Layne Watson. 431-436
• A Full Dimensional Numerical Study of Pulsatile Human Blood Flow in Aortic ArchRenat A. Sultanov, Dennis Guster, Brent Engelbrekt, Richard Blankenbecler. 437-443
• Long-Term HIV Dynamics: Mathematical Modeling and Optimal ControlMarios M. Hadjiandreou, Raúl Conejeros, Vassilios S. Vassiliadis, D. Ian Wilson. 444-450
• An Algorithm for Discrimination of Multiple-Fragment Peaks in Capillary Fingerprinting ChromatogramsFrank M. You, Ming-Cheng Luo, Yong Qiang Gu, Gerard R. Lazo, Jan Dvorák, Olin D. Anderson. 451-456
• Gait Analysis on the Use of Four-castered Walker and Elderly-simulation SuitTetsuya Hirotomi, Yasutomo Hosomi. 457-463
• The Slower Side Marches to a Distant Drummer: A Fresh Look at the Results of a Paper and Pencil Test for Laterality of Motor ControlIraj Derakhshan. 464-469
• Right Handers Breathe with Left Hemisphere: Handedness and the Risk of Sudden Death in Hemispheric Stroke in NASCETIraj Derakhshan. 470-477
• Extraction of Interested Objects in Botanic Somatic Embryo ImagesLizhen Yang, Zhaobin Wang, Yide Ma, Feiyan Cheng, Qingxiang Gao. 478-482
• Classification of normal and abnormal knee joint using back-propagation neural networkKeo-Sik Kim, Jeong-Hwan Seo, Chul-Gyu Song. 483-488
• Comparison of acoustical parameters of knee sound according to pathological condition for pattern extractionChul-Gyu Song, Keo-Sik Kim, Jeong-Hwan Seo. 489-493
• Optimum electrode configuration to estimate abdominal pressure using regression analysis of bio-impedance signalChul-Gyu Song, Keo-Sik Kim, Yang Su An, Jeong-Hwan Seo. 494-499
• Computational Neuroinformatics - Basic Science and Clinical ApplicationsJohn C. Mazziotta, Arthur W. Toga. 503-512
• Streptococcus in Toto: A Species-specific Comparative Analysis Website PrototypeRoxanne Tapia, Gary Xie, Ravi D. Barabote, Gerry Myers, Thomas S. Brettin. 513-517
• Bioinformatic Analysis of Iron Acquisition Systems in Bacillus anthracisJingao Dong, Srinivas Iyer, Christy Ruggiero, Murray Wolinsky, Jian Song. 518-526
• An Evaluation of Discretization Methods for Learning Rules from Biomedical DatasetsJonathan L. Lustgarten, Shyam Visweswaran, Himanshu Grover, Vanathi Gopalakrishnan. 527-532
• Mathematical Analysis of EEG Signals of Patients with Prion DseaseMukesh Doble. 533-537
• Fine-Grained Parallel Zuker Algorithm Accelerator with Storage Optimization on FPGAFei Xia, Yong Dou, Jiaqing Xu. 538-544
• Semantic Discovery of Protein Web ServicesXiong Liu, Hassan A. Karimi. 545-550
• Scalable Parallel Word Search in Multi-Core/Multiprocessor SystemsFrank Drews, Eric Petri, Jens Lichtenberg, Lonnie R. Welch. 551-557
• Northwest Trajectory Analysis Capability: A Platform for Enhancing Biophysics AnalysisElena Peterson, Eric Stephan, Abbie Corrigan, Roberto D. Lins, Thereza A. Soares, Randy Scarberry, Stuart Rose, Leigh Williams, Canhai Lai, Terence Critchlow, Tjerk P. Straatsma. 558-562
• Improved Segmentation Based on Probabilistic LabelingKai-Chieh Yang, Ming-Chi Jhuang, Chun-Shun Tseng, Jhan-Syuan Yu, Jung-Hua Wang. 563-567
• An Organizational Framework of Personal Health Records for Social NetworksSyed Omair Hasan, Shmuel Rotenstreich. 568-572
• An Overview of the BioExtract Server - a Distributed, Web Based Application for Bioinformatic AnalysisCarol Lushbough, Volker Brendel. 573-578
• Integrated ICT approach to improve clinical processes in healthcare organizations: a case studyElena Sini, Paolo Locatelli, Nicola Restifo. 579-586
• Combinations of Context-Free Shifts and Shifts of Finite TypeHiroshi Kamabe. 587-593
• Bioinformatics for Leukemia(MDS) Associated with Bone Marrow DepressionTapas Kumar Basak, Thavasi Anandam Ravi, Velankanni Cyrilraj, Gurusamy Gunansekaran, Thiruvenngadam Ramanujam. 594-600
• BioInView: Integration and Querying of Heterogeneous Biological Data SourcesPasquale Capasso, Antonio Picariello. 601-607
• TableMaker: An ad hoc Query Tool for Relational DatabasesCarol Lushbough, Jon Duvick, Qunfeng Dong, Douglas Jennewein, Joe Reynoldson, Volker Brendel. 608-611
• Bioinformatics Tools: Searching for Markers in DNA/RNA SequencesKuha Mahalingam, Omar Bagasra. 612-615
• Inverse protein folding in 3D hexagonal prism lattice under HP modelAlireza Hadj Khodabakhshi, Ján Manuch, Arash Rafiey, Arvind Gupta. 619-625
• Noise Tolerance of the Universal Similarity Metric Applied to Protein Contact Map Comparison in Two DimensionsSara Rahmati, Janice I. Glasgow. 626-632
• Protein Fold Family Recognition From Unassigned Residual Dipolar Coupling DataRishi Mukhopadhyay, Paul Shealy, Homayoun Valafar. 633-638
• A new algorithm for RNA secondary structure prediction and fast method for prediction of simple H-type pseudoknotsOyun-Erdene Namsrai, Garmaa Dangaasuren, Keun Ho Ryu. 639-645
• Automated Assignment of Backbone Resonances Using Residual Dipolar Couplings Acquired from a Protein with Known StructurePaul Shealy, Rishi Mukhopadhyay, Stephen Smith, Homayoun Valafar. 646-652
• Blueprint for an Algorithm for Conformational Transformation Tolerant Search Through a Database of Protein StructuresIvana Mihalek. 653-659
• Molecular Dynamics Simulations of Folding and Insertion of the Ebola Vrus Fusion Peptide into a Membrane BilayerMark Olson, In-Chul Yeh, Michael Lee. 660-665
• Analysis of Protein-Ligand Interactions Using Localized Stereochemical FeaturesReetal Pai, James C. Sacchettini, Thomas R. Ioerger. 666-673
• New Algorithm and Web Server for Finding Proteins with Similar 3D StructuresZaixin Lu, Zhiyu Zhao, Sergio Garcia, Bin Fu. 674-680
• GIPSCo: A Method for Comparison of Protein Structures Based on Geometric InvariantsSandeep Deshmukh, Aniket Dalal, Pramod Wangikar. 681-687
• Protein Structure Searching using Suffix ArraysTarek Gharib, Ahmed Salah, Ibarhim El Henawy, Abdel-Badeeh Salem. 688-691
• Using Protein Structural Alphabet to Characterize Local Structure FeaturesShih-Yen Ku, Yuh-Jyh Hu. 692-697
• Functional Annotation of Protein Isoforms and Modified FormsHarold J. Drabkin, Cecilia N. Arighi, Cathy H. Wu, Judith A. Blake. 701-707
• The Role of Protein Electrostatics in Facilitating the Catalysis of DEAD-box ProteinsChristopher M. Frenz. 708-712
• K-Nearest Neighbor Classifier Ensemble for Prediction of Phosphorylation SitesZhiwen Yu, Zhongkai Deng, Hau-San Wong. 713-717
• Prediction of Protein Function Using Graph Container and Message PassingHongbo Zhou, Qiang Cheng, Mehdi Zargham. 718-723
• Simulation of FGF-2 Binding with Receptors on Cell Surface on the Wall in a Bioreactor SystemChangjiang Zhang, Wensheng Shen, Kimberly Forsten-Williams, Michael Fannon, Jun Zhang. 724-727
• Proteins: From Structural Classification to Amino Acid Interaction NetworksOmar Gaci, Stefan Balev. 728-734
• ESPSim: A JAVA Application for Calculating Electrostatic Potential Map Similarity ScoresGregory Martyn, Christopher M. Frenz. 735-737
• Minimum Data Requirements and Supplemental Angle Constraints for Protein Structure Prediction with REDCRAFTElizabeth Timko, Paul Shealy, Michael Bryson, Homayoun Valafar. 738-744
• Ronald: A Domain-Specific Language to Study the Interactions Between Malaria Infections and Drug TreatmentsTiago Antao, Ian Hastings, Peter McBurney. 747-752
• Classifying Proteins Related to Adverse Drug Reactions from Drug Targets Using Support Vector MachinesShih-Fang Lin, Ke-Ting Xiao, Chung-Cheng Chiu, Von-Wun Soo. 753-759
• A Quantitative Semantics of Formal Ontology of Drug InteractionsKoji Tashima, Naoko Izumi, Naoki Yonezaki. 760-766
• No Tale in the TailSridhar Ramachandran, Dayananda Sagar Gangadharaiah. 767-774
• Laterality of Motor Control and its Robotic Applications: A Paper and Pencil Method for Lateralizing the Major (Action, Thought) HemisphereIraj Derakhshan. 775-786
• Specificity Normalization for Identifying Selective Inhibitors in Virtual ScreeningReetal Pai, James C. Sacchettini, Thomas R. Ioerger. 787-793
• The SiteSeeker Motif Discovery ToolKlaus Ecker, Jens Lichtenberg, Lonnie R. Welch. 794-797
• Inferring Gene Regulatory Network of Yeast Cell-Cycle using Dynamic Bayesian NetworkPeng Li, Chaoyang Zhang, Edward J. Perkins, Ping Gong, Youping Deng. 801-805
• Creating a Workflow for Expressed Sequence Tags AnalysisMehdi Pirooznia, Ping Gong, Chaoyang Zhang, Edward J. Perkins, Youping Deng. 806-808
• The Table of Interface Forming Residues as the Specificity Indicator for Serine Proteases Bound to Different InhibitorsRoberto C. Togawa, Crisitna Ribeiro, Ivan Mazoni, Thais Pelligrinelli, Jose Jardine, Goran Neshich. 811-817
• HiperMUSCLE: An Intuitive Graphical User Interface for the Multiple Sequence Alignment Program MUSCLE (Edgar, 2004)Gustavo Santos, Italo M. C. Maia, Fabiana F. Araújo, Ana C. L. Pacheco, Sarah Medeiros, Carla R. F. Gadelha, Samara C. Silva, Raimundo Araujo-Filho, Diana M. Oliveira. 818-824
• Predictive evidence of phosphorylation sites using in silico resources and 2-D-gel of gastrocnemic muscle proteins as analytical modelAlex S. M. Ferraz, André A. N. Machado, Francisco F. U. Santos Júnior, Jamille S. M. Alves, Gandhi Rádis-Baptista, Kaprice F. F. de Sales, Diana M. de Oliveira, Sandra M. D. Moraes, José H. Leal-Cardoso, Valdenize Tizziani, Vânia M. Ceccatto. 825-831
• Multiscale Models for Synthetic BiologyYiannis N. Kaznessis, Vassilios Sotiropoulos, Anthony D. Hill, Jonathan R. Tomshine, Katherine Volzing, John Barrett, Emma M. B. Weeding. 835-837
• Integrating Evidence for Evaluation of Potential Novel Protein-coding Genes Using Bayesian NetworksNan Wang, Changhe Yuan, Shane C. Burgess, Bindu Nanduri, Mark Lawrence, Susan Bridges. 838-843
• Similarity Search for Sequence Based On Grouped Seeds Criterion with Optimal Search MechanismChen Ke, Zhu Qingxin. 844-847
• A Deterministic Algorithm for DNA Sequence ComparisonAbdelhak Kheniche, Abdellah Salhi, Andrew Harrison, John M. Dowden. 848-854
• TandemXP - A Computational Approach to Finding Approximate Tandem Repeats in Genomic SequencesAvinash Shankaranarayanan, Christine Amaldas. 855-861
• Tissue Conductivity Anisotropy Inhomogeneity Study in EEG Head ModellingMd. Rezaul Bashar, Yan Li, Peng Wen. 862-867
• Optimal Search Model for Combined Strategy in Sequence AlignmentQingxin Zhu, Fan Yang, Ke Chen. 868-874
• A Computational Framework for Performance Optimization of Bioinformatics ClustalWAvinash Shankaranarayanan, Christine Amaldas. 875-881
• Identification of Representative Protein Sequence and Secondary Structure Prediction using SVM ApproachM. Abdul Mottalib, Rahat Hossain. 882-886
• Analysis of Physiological Measures for Human Cognitive State EstimationRajesh Singla, Hari Singh. 887-890
• Cluster Analysis and Phylogenetic Relationship in Biomarker Identification of Microarray Data of Type 2 Diabetes and Nephropathy in Asian IndiansSatya Vani Guttula, Allam Appa Rao, G. R. Sridhar, M. S. Chakravarthy, Kunjum Nageshwararo, Paturi V. Rao, Hanuman Thota. 891-896
• Computational Detection of TFBS in Apoptotic Protein ComplexesFred Peng, Frederic Pio. 903-909
• A Method to Identify Essential Features of Cold-adapted EnzymesSaid Hassan Ahmed, Tor Flå. 910-917
• The Protein Secondary Structure FlexibilityKresimir Sikic, Branko Jeren, Sanja Tomic. 918-826
• Identifying Protein Flexibility by NMAKresimir Sikic, Branko Jeren, Sanja Tomic. 927-933
• ENVIRONMENT: A Stochastic Simulation Platform to Study Protocell DynamicsFabio Mavelli, Marco Lerario, Kepa Ruiz-Mirazo. 934-941
• Analysis of Microarray Titration ExperimentsIonut Bebu, Françoise Seillier-Moiseiwitsch, Hongfang Liu. 942-946
• Platescale: The Birthday Problem Applied to Single Molecule PCRChris Stowers, Erik Boczko. 947-953
• Hybrid Approach Based on Principal Component and Multiple Discriminant Analysis for Microarray ClassificationArwa Al-Sultan, M. Arif Wani. 954-960
• BindN+ for Improved Prediction of DNA or RNA Binding Residues in Protein Sequences Using Evolutionary InformationLiangjiang Wang. 961-964
• Protein-Protein Interaction Detection from Primary Structure using Support Vector MachineTaskeed Jabid, Mohammad Shoyaib, Syed Murtuza Baker, Firoz Anwar, Md. Mehedi Hasan. 965-969
• Statistical Analysis on Detecting Signals of Adverse Drug Events with Drug-Drug InteractionsYu-Ting Huang, Shih-Fang Lin, Von-Wun Soo. 970-976
• Development of a Human arm-liked Robotic Surgical System with Force Measurement for Laparoscopic SurgeryKi-Young Kim, Ho-Seok Song, Jung-Ju Lee. 977-983
• Dynamic Graph-based Relational Learning of Temporal Patterns in Biological Networks Changing over TimeChang Hun You, Lawrence B. Holder, Diane J. Cook. 984-990
• Improving Automatic Inference of the Biological Network Governing C. elegans Vulval Induction by Incorporating Interaction DataXiaoyun Sun, Pengyu Hong. 991-997
• A Stepwise Generalization Method for Extracting Minimum Generalized Set from Mismatch ClusterHiroaki Kimura, Hajime Kitakami, Kotaro Araki, Keiichi Tamura. 998-1004
• A Robust Network Alignment Algorithm for Detecting Evolutionarily Conserved Networks and Protein Complexes Across SpeciesYu-Chun Lin, Hsiang-Yuan Yeh, Cheng-Yu Yeh, Von-Wun Soo. 1005-1011
• Identification of Gene using Machine Learning TechniqueFiroz Anwar, Syed Murtuza Baker, Mohammad Shoyaib, Taskeed Jabid, Md. Mehedi Hasan. 1012-1014
• A Case Study of Genetic influence via Principal Component Analysis and Bayesian Factor AnalysisGaolin Zheng, Tonny Sangutei, Yingjun Cao. 1015-1021
• Fuzzy Ontology Based QueryingHarold Vasquez, Ana Isabel Aguilera, Leonid José Tineo Rodríguez. 1022-1027
• Clustering versus Scoring for the Identification of Near-Native Poses in Protein-Ligand DockingTaner Kaya, Dima Kozakov, Sandor Vajda. 1028-1032
• Bioinformatics Aspects in Diabetic Neuropathy Using Functional Protein SequencesHanuman Thota, Sivaprasad Akula, Kunjum Nageswara Rao, Suresh Babu Changalsetty, Apparao Allam, Lalitha Saroja Thota. 1033-1039
• A Strategy for High Throughput Microarray Oligo Probe Design Using 454 and Sanger Sequencing Data of Eisenia fetida Expressed Sequence TagsPing Gong, Mehdi Pirooznia, Xin Guan, J. Cristobal Vera, Chun Liang, Youping Deng, Chaoyang Zhang, Edward J. Perkins. 1040-1043