Table of Contents

• Optimization of the Sliding Window Size for Protein Structure PredictionKe Chen, Lukasz A. Kurgan, Jishou Ruan. 1-7 [doi]
• A profile-based protein sequence alignment algorithm for a domain clustering databaseLin Xu, Fa Zhang, Zhiyong Liu. 1-8 [doi]
• Feature Selection Approach for Quantitative Prediction of Transcriptional ActivitiesAshish Anand, Gary B. Fogel, E. Ke Tang, Ponnuthurai N. Suganthan. 1-6 [doi]
• PSpice Simulation of Cardiac Impulse Propagation: studying the mechanisms of action potential propagationSomayeh Mahdav, Shahriar Gharibzadeh, Mostafa Rezaei-Tavirani, Farzad Towhidkhah, Soheil Shafiee. 1-5 [doi]
• A Comparative Study on Feature Extraction from Protein Sequences for Subcellular Localization PredictionWen-Yun Yang, Bao-Liang Lu, Yang Yang. 1-8 [doi]
• Clustering and Cross-talk in a Yeast Functional Interaction NetworkJennifer Hallinan, Anil Wipat. 1-8 [doi]
• A New Approach to Identify Functional Modules Using Random Matrix TheoryMengxia Zhu, Qishi Wu, Yunfeng Yang, Jizhong Zhou. 1-7 [doi]
• Covariance Searches for ncRNA Gene FindingScott F. Smith 0002. 1-7 [doi]
• Bottom-Up Biclustering of Expression DataKenneth Bryan, Padraig Cunningham. 1-8 [doi]
• Visualization of Support Vector Machines with Unsupervised LearningLutz Hamel. 1-8 [doi]
• Identification of non random motifs in loops using a structural alphabetLeslie Regad, Juliette Martin, Anne-Claude Camproux. 1-9 [doi]
• Iris Recognition Algorithm Optimized for Hardware ImplementationKamil Grabowski, Wojciech Sankowski, Malgorzata Napieralska, Mariusz Zubert, Andrzej Napieralski. 1-5 [doi]
• Integrating Affymetrix microarray data sets using probe-level test statistic for predicting prostate cancerPingzhao Hu, Celia M. T. Greenwood, Joseph Beyene. 1-8 [doi]
• Classification of Relapse Ovarian Cancer on MALDI-TOF Mass Spectrometry DataJung Hun Oh, Animesh Nandi, Prem Gurnani, Lynne Knowles, John Schorge, Kevin P. Rosenblatt, Jean Gao. 1-8 [doi]
• A Model-Free Greedy Gene Selection for Microarray Sample Class PredictionYi Shi, Zhipeng Cai, Lizhe Xu, Wei Ren, Randy Goebel, Guohui Lin. 1-8 [doi]
• Motif Evaluation by Leave-one-out ScoringAudrey Girouard, Noah W. Smith, Donna K. Slonim. 1-7 [doi]
• Efficient Probe Selection in Microarray DesignLeszek Gasieniec, Cindy Y. Li, Paul Sant, Prudence W. H. Wong. 1-8 [doi]
• Bicluster Analysis of Genome-Wide Gene ExpressionKuanchung Chen, Yuh-Jyh Hu. 1-7 [doi]
• Biomarker Identification and Rule Extraction from Mass Spectral Serum ProfilesHabtom W. Ressom, Rency S. Varghese, Eduard Orvisky, Steven K. Drake, Glen L. Hortin, Mohamed Abdel-Hamid, Christopher A. Loffredo, Radoslav Goldman. 1-7 [doi]
• SARNA-Predict: A Simulated Annealing Algorithm for RNA Secondary Structure PredictionHerbert H. Tsang, Kay C. Wiese. 1-10 [doi]
• Detecting Similarities between Families of Bio-sequences using the Steady-State of a PCA-Neural NetworkMosaab Daoud, Stefan C. Kremer. 1-7 [doi]
• A New Hybrid Approach for Unsupervised Gene SelectionYoung Bun Kim, Jean Gao. 1-8 [doi]
• A Swarm Intelligence Based Algorithm for Proteomic Pattern Detection of Ovarian CancerYan Meng. 1-7 [doi]
• P-found: The Protein Folding and Unfolding Simulation RepositoryCândida G. Silva, Vitaliy Ostropytskyy, Nuno Loureiro-Ferreira, Daniel P. Berrar, Martin Swain, Werner Dubitzky, Rui M. M. Brito. 1-8 [doi]
• A Novel Graphical Model Approach to Segmenting Cell ImagesShann-Ching Chen, Ting Zhao, Geoffrey J. Gordon, Robert F. Murphy. 1-8 [doi]
• A Fast Multivariate Feature-Selection/Classification Approach for Prediction of Therapy Response in Multiple SclerosisSara Mostafavi, Sergio Baranzini, Jorge Oksenberg, Parvin Mousavi. 1-8 [doi]
• Data Visualization with Simultaneous Feature SelectionDharmesh M. Maniyar, Ian T. Nabney. 1-8 [doi]
• Machine Learning in Basecalling Decoding Trace Peak BehaviourDavid Thornley, Stavros Petridis. 1-8 [doi]
• An Exploration of Differential Utility in Iterated Prisoner s DilemmaDan Ashlock, Wendy Ashlock, Gary Umphry. 1-8 [doi]
• Filtration and Depth Annotation Improve Non-linear Projection for RNA Motif DiscoveryJustin Schonfeld, Dan Ashlock. 1-8 [doi]
• Analysis of Thermodynamic Models and Performance in RnaPredict - An Evolutionary Algorithm for RNA FoldingKay C. Wiese, Andrew Hendriks, Alain Deschênes. 1-9 [doi]
• Prediction of the Number of Helices for the Twilight Zone ProteinsKanaka Durga Kedarisetti, Ke Chen, Aashima Kapoor, Lukasz A. Kurgan. 1-7 [doi]
• Inference of Gene Regulatory Networks from Time Course Gene Expression Data Using Neural Networks and Swarm IntelligenceHabtom W. Ressom, Yuji Zhang, Jianhua Xuan, Yue Wang, Robert Clarke. 1-8 [doi]
• Clinical Characterization of Electromyographic Data Using Computational ToolsAndrew Hamilton-Wright, Daniel W. Stashuk. 1-7 [doi]
• Bootstrap Inference with Neural-Network Modeling for Gene-Disease Association TestingNelli Shimko, Marie-Pierre Dube. 1-7 [doi]
• Aggregating Homologous Protein Families in Evolutionary Reconstructions of HerpesvirusesBoris Mirkin, Renata da Silva Camargo, Trevor I. Fenner, George Loizou, Paul Kellam. 1-8 [doi]
• A Systematic Computational Approach for Transcription Factor Target Gene PredictionJi He, Xinbin Dai, Xuechun Zhao. 1-7 [doi]
• A Fuzzy Data Mining Technique for the Reconstruction of Gene Regulatory Networks from Time Series Expression DataPatrick C. H. Ma, Keith C. C. Chan. 1-8 [doi]
• An Evolutionary Algorithm for the Selection of Geographically Informative SpeciesDan Ashlock, Karl Cottenie, Lindsey Carson, Kenneth Mark Bryden, Steven M. Corns. 1-7 [doi]
• A Bayesian approach to pairwise RNA Secondary Structure AlignmentZhuozhi Wang, Elisabeth R. M. Tillier. 1-8 [doi]
• Understanding the Evolutionary Process of Grammatical Evolution Neural Networks for Feature Selection in Genetic EpidemiologyAlison A. Motsinger, David M. Reif, Scott M. Dudek, Marylyn D. Ritchie. 1-8 [doi]
• A Systematic Approach for Identifying Regulatory Interactions in Large Temporal Gene Expression Datasets from Peripheral BloodSimon Knott, Parvin Mousavi, Sergio Baranzini. 1-8 [doi]
• Bayesian Segmentation using Residue Proximity for Secondary Structure and Contact PredictionNiranjan P. Bidargaddi, Madhu Chetty, Joarder Kamruzzaman. 1-8 [doi]
• Using Voronoi Grid and SVM Linear Regression in Drug DiscoveryA. Ammar Ghaibeh, Mikio Sasaki, Hiroshi Chuman. 1-6 [doi]
• A Systematic Statistical Process for Microarray Data Analysis: Countering the Limitations in the Public Data SetsJarukit Lertbantanawong, Jonathan H. Chan. 1-8 [doi]
• Non-Isomorphic Coding in Lattice Model and its Impact for Protein Folding Prediction Using Genetic AlgorithmTamjidul Hoque, Madhu Chetty, Laurence S. Dooley. 1-8 [doi]
• Gene Ontology Driven Feature Selection from Microarray Gene Expression DataJianlong Qi, Jian Tang. 1-7 [doi]
• The Image Registration of TME Biomedical Images in variant Creutzfeldt-Jakob DiseasesMariusz Zubert, Malgorzata Napieralska, Andrzej Napieralski, Beata Sikorska, Pawel Liberski, Rafal Grams. 1-8 [doi]
• Determination of the Relative Importance of Gene Function or Taxonomic Grouping to Codon Usage Bias Using Cluster Analysis and SVMsJianmin Ma, Minh Ngoc Nguyen 0002, Gary B. Fogel, Jagath C. Rajapakse. 1-8 [doi]
• A Systematic Approach for Identifying Regulatory Interactions in Large Temporal Gene Expression Datasets from Peripheral BloodSimon Knott, Parvin Mousavi, Sergio Baranzini. 1-8 [doi]
• A Hidden Markov Model Approach to Identifying HTH Motifs Using Protein Sequence and Predicted Solvent AccessibilityChanghui Yan, Jing Hu. 1-7 [doi]
• Developing Antibiotic Regimens Using Evolutionary AlgorithmsSteven M. Corns, H. Scott Hurd, Dan Ashlock, Kenneth Mark Bryden. 1-6 [doi]
• Protein-Protein Interface Residue Prediction with SVM Using Evolutionary Profiles and Accessible Surface AreasMinh Ngoc Nguyen 0002, Jagath C. Rajapakse. 1-5 [doi]
• A Differential Evolution Approach for Protein FoldingReginaldo Bitello, Heitor S. Lopes. 1-5 [doi]
• E2D: A Novel Tool for Annotating Protein Domains in Expressed Sequence TagsGuo-Hsing Lee, Nai-Yu Chuang, Wen-Dar Lin, Chung-Der Hsiao, Hahn-Ming Lee, Jan-Ming Ho. 1-6 [doi]
• A Fuzzy Kohonen SOM Implementation and Clustering of Bio-active Compound Structures for Drug DiscoveryJehan Zeb Shah, Naomie Salim. 1-6 [doi]
• A Random Walk Modelling Approach for Passive Metabolic Pathways in Gram-Negative BacteriaAmin R. Mazloom, Kalyan Basu, Sajal K. Das. 1-8 [doi]
• Classification of Scleroderma and Normal Biopsy Data and Identification of Possible Biomarkers of the DiseaseTopon Kumar Paul, Hitoshi Iba. 1-6 [doi]
• A Fast Algorithm for Detecting Frame Shifts in DNA sequencesHassan Masoom, Suprakash Datta, Amir Asif, Lesley Cunningham, Gillian Wu. 1-8 [doi]
• Predicting Protein-Protein Interface using Desolvation Energy Similarity MatchingYasir Arafat, Gour C. Karmakar, Joarder Kamruzzaman, Juan Fernández-Recio. 1-8 [doi]
• Inferring functional coupling of proteins using the Evolutionary Bond Energy AlgorithmRyosuke Watanabe, Edgar E. Vallejo, Enrique Morett. 1-6 [doi]
• Fuzzy C-means for inferring functional coupling of proteins from their phylogenetic profilesJuan Carlos Fernández, Edgar E. Vallejo, Enrique Morett. 1-8 [doi]
• Feature Selection using a Random Forests Classifier for the Integrated Analysis of Multiple Data TypesDavid M. Reif, Alison A. Motsinger, Brett A. McKinney, James E. Crowe Jr., Jason H. Moore. 1-8 [doi]
• Causal Modeling of Gene Regulatory NetworkRamesh Ram, Madhu Chetty, Trevor I. Dix. 1-8 [doi]
• A Stochastic model to estimate the time taken for Protein-Ligand DockingPreetam Ghosh, Samik Ghosh, Kalyan Basu, Sajal K. Das, Simon Daefler. 1-8 [doi]
• A method to integrate, assess and characterize the protein-protein interactionsFa Zhang, Lin Xu, Jingchun Chen, Zhiyong Liu, Bo Yuan. 1-7 [doi]
• G Protein-Coupled Receptor Classification at the Subfamily Level with Probabilistic Suffix TreeJingyi Yang, Jitender S. Deogun. 1-8 [doi]