Table of Contents

• Scientific workflow rewriting while preserving provenanceSarah Cohen Boulakia, Christine Froidevaux, Jiuqiang Chen. 1-9 [doi]
• g-Social: Enhancing integrated e-science tools with Social Networking functionalityAndriani Stylianou, Nicholas Loulloudes, Marios D. Dikaiakos. 1-8 [doi]
• Lessons learned from Galaxy, a Web-based platform for high-throughput genomic analysesJeremy Goecks, The Galaxy Team, Anton Nekrutenko, James Taylor. 1-6 [doi]
• Data-intensive analysis of HIV mutationsMina Cintho, Roberto Marcondes Cesar Junior, João Eduardo Ferreira. 1-7 [doi]
• Mining hidden mixture context with ADIOS-P to improve predictive pre-fetcher accuracyJong Youl Choi, Hasan Abbasi, David Pugmire, Norbert Podhorszki, Scott Klasky, Cristian Capdevila, Manish Parashar, Matthew Wolf, Judy Qiu, Geoffrey Fox. 1-8 [doi]
• Integration of modern data management practice with scientific workflowsNeil E. B. Killeen, Jason M. Lohrey, Michael J. Farrell, Wilson Liu, Slavisa Garic, David Abramson, Hoang Nguyen, Gary F. Egan. 1-8 [doi]
• RunMyCode.org: A novel dissemination and collaboration platform for executing published computational resultsVictoria Stodden, Christophe Hurlin, Christophe Perignon. 1-8 [doi]
• Efficient data transfer protocols for big dataBrian Tierney, Ezra Kissel, D. Martin Swany, Eric Pouyoul. 1-9 [doi]
• IRMIS: The care and feeding of a generalized relatively relational database for accelerator components with a connection to the real time EPICS Input output controllersRichard L. Farnsworth, Scott Benes. 1-3 [doi]
• A data-driven urban research environment for AustraliaRichard O. Sinnott, Christopher Bayliss, Gerson Galang, Phillip Greenwood, George Koetsier, Damien Mannix, Luca Morandini, Marcos Nino-Ruiz, Chris Pettit, Martin Tomko, Muhammed Sarwar, Robert Stimson, William Voorsluys, Ivo Widjaja. 1-8 [doi]
• P∗: A model of pilot-abstractionsAndré Luckow, Mark Santcroos, André Merzky, Ole Weidner, Pradeep Kumar Mantha, Shantenu Jha. 1-10 [doi]
• Image retrieval in the unstructured data management system AUDRJunwu Luo, Bo Lang, Chao Tian, Danchen Zhang. 1-7 [doi]
• Data-oriented research for bioresource utilization: A case study to investigate water uptake in cellulose using Principal ComponentsLiu-yi Ling, Carlos Driemeier, Roberto M. Cesar. 1-7 [doi]
• Flashes in a star stream: Automated classification of astronomical transient eventsS. George Djorgovski, Ashish Mahabal, Ciro Donalek, Matthew J. Graham, Andrew J. Drake, Baback Moghaddam, Mike Turmon. 1-8 [doi]
• Pilot abstractions for compute, data, and networkMark Santcroos, Sílvia Delgado Olabarriaga, Daniel S. Katz, Shantenu Jha. 1-2 [doi]
• Calibration of watershed models using cloud computingMarty Humphrey, Norm Beekwilder, Jonathan L. Goodall, Mehmet B. Ercan. 1-8 [doi]
• eResearch environment for remote instrumentation: VBL, RLI, VisLabl & 2Chris Myers, Michael D'Silva. 1-2 [doi]
• CINET: A cyberinfrastructure for network scienceSherif Elmeligy Abdelhamid, Richard Aló, S. M. Arifuzzaman, Peter H. Beckman, Md Hasanuzzaman Bhuiyan, Keith R. Bisset, Edward A. Fox, Geoffrey Charles Fox, Kevin Hall, S. M. Shamimul Hasan, Anurodh Joshi, Maleq Khan, Chris J. Kuhlman, Spencer J. Lee, Jonathan Leidig, Hemanth Makkapati, Madhav V. Marathe, Henning S. Mortveit, Judy Qiu, S. S. Ravi, Zalia Shams, Ongard Sirisaengtaksin, Rajesh Subbiah, Samarth Swarup, Nick Trebon, Anil Vullikanti, Zhao Zhao. 1-8 [doi]
• Generalized representation and mapping for social-ecological data: Freeing data from the databaseScott Jensen, Beth Plale, Xiaozhong Liu, Miao Chen, David B. Leake, Julie England. 1-8 [doi]
• Prediction of protein solubility in E. coliTaghrid Samak, Dan Gunter, Zhong Wang. 1-8 [doi]
• GridFTP based real-time data movement architecture for x-ray photon correlation spectroscopy at the Advanced Photon SourceS. Narayanan, T. J. Madden, A. R. Sandy, Rajkumar Kettimuthu, Michael Link. 1-8 [doi]
• High-performance computing without commitment: SC2IT: A cloud computing interface that makes computational science available to non-specialistsKevin Jorissen, William Johnson, Fernando D. Vila, John J. Rehr. 1-6 [doi]
• Large Scale Video Analytics: On-demand, iterative inquiry for moving image researchVirginia Kuhn, Ritu Arora, Alan Craig, Kevin Franklin, Michael Simeone, Dave Bock, Luigi Marini. 1-5 [doi]
• From scripts towards provenance inferenceMohammad Rezwanul Huq, Peter M. G. Apers, Andreas Wombacher, Yoshihide Wada, Ludovicus P. H. van Beek. 1-8 [doi]
• FRED Navigator: An interactive system for visualizing results from large-scale epidemic simulationsJack Paparian, Shawn T. Brown, Donald S. Burke, John J. Grefenstette. 1-5 [doi]
• Dynamic network provisioning for data intensive applications in the cloudPaul Ruth, Anirban Mandal, Yufeng Xin, Ilia Baldine, Chris Heermann, Jeff Chase. 1-2 [doi]
• Using Promethee methods for multi-criteria pull-based scheduling on DCIsMircea Moca, Gilles Fedak. 1-8 [doi]
• The Earth System Grid Federation: An open infrastructure for access to distributed geospatial dataLuca Cinquini, Daniel J. Crichton, Chris Mattmann, John Harney, Galen M. Shipman, Feiyi Wang, Rachana Ananthakrishnan, Neill Miller, Sebastien Denvil, Mark Morgan, Zed Pobre, Gavin M. Bell, Bob Drach, Dean N. Williams, Philip Kershaw, Stephen Pascoe, Estanislao Gonzalez, Sandro Fiore, Roland Schweitzer. 1-10 [doi]
• Data intensive science at synchrotron based 3D x-ray imaging facilitiesFrancesco De Carlo, Xianghui Xiao, Kamel Fezzaa, Steve Wang, Nicholas Schwarz, Chris Jacobsen, Nikhilesh Chawla, Florian Fusseis. 1-3 [doi]
• A simulator for social exchanges and collaborations - Architecture and case studyChristian Haas, Simon Caton, Daniel Trumpp, Christof Weinhardt. 1-8 [doi]
• Quality of data driven simulation workflowsMichael Reiter, Uwe Breitenbücher, Oliver Kopp, Dimka Karastoyanova. 1-8 [doi]
• A framework to access handwritten information within large digitized paper collectionsLiana Diesendruck, Luigi Marini, Rob Kooper, Mayank Kejriwal, Kenton McHenry. 1-10 [doi]
• A satellite data portal developed for crowdsourcing data analysis and interpretationZhenghui Hu, Wenjun Wu. 1-8 [doi]
• Experiences in the design and implementation of a Social Cloud for Volunteer ComputingRyan Chard, Kris Bubendorfer, Kyle Chard. 1-8 [doi]
• Towards HPC for the digital Humanities, Arts, and Social Sciences: Needs and challenges of adapting academic HPC for big dataKalev Leetaru. 1-6 [doi]
• Statistical analysis and visualization services for Spatially Integrated Social Science datasetsIrfan Azeezullah, Friska Pambudi, Tung-Kai Shyy, Imran Azeezullah, Nigel Ward, Jane Hunter, Robert J. Stimson. 1-8 [doi]
• Incorporating circulation data in relevancy rankings for search algorithms in library collectionsHarriett E. Green, Kirk Hess, Richard Hislop. 1-6 [doi]
• ExSciTecH: Expanding volunteer computing to Explore Science, Technology, and HealthM. Matheny, S. Schlachter, L. M. Crouse, E. T. Kimmel, Trilce Estrada, Marcel Schumann, Roger Armen, Gary M. Zoppetti, Michela Taufer. 1-8 [doi]
• Adaptive sampling of streaming signalsBarbara S. Minsker, Tristan A. Wietsma. 1-7 [doi]
• Common motifs in scientific workflows: An empirical analysisDaniel Garijo, Pinar Alper, Khalid Belhajjame, Óscar Corcho, Yolanda Gil, Carole A. Goble. 1-8 [doi]
• Why workflows break - Understanding and combating decay in Taverna workflowsJun Zhao, José Manuél Gómez-Pérez, Khalid Belhajjame, Graham Klyne, Esteban García-Cuesta, Aleix Garrido, Kristina M. Hettne, Marco Roos, David De Roure, Carole A. Goble. 1-9 [doi]
• Open Social based group access control framework for e-Science data infrastructureHui Zhang, Wenjun Wu 0001, ZhenAn Li. 1-8 [doi]
• Folding proteins at 500 ns/hour with Work QueueBadi Abdul-Wahid, Li Yu, Dinesh Rajan, Haoyun Feng, Eric Darve, Douglas Thain, Jesús A. Izaguirre. 1-8 [doi]
• Virtual Simulation Objects concept as a framework for system-level simulationSergey V. Kovalchuk, Pavel A. Smirnov, Sergey S. Kosukhin, Alexander Boukhanovsky. 1-8 [doi]
• Cooperative VM migration for a virtualized HPC cluster with VMM-bypass I/O devicesRyousei Takano, Hidemoto Nakada, Takahiro Hirofuchi, Yoshio Tanaka, Tomohiro Kudoh. 1-8 [doi]
• Fast confidential search for bio-medical data using Bloom filters and Homomorphic CryptographyHenning Perl, Yassene Mohammed, Michael Brenner, Matthew Smith. 1-8 [doi]
• Web applications for experimental control at CLSDong Liu, Dylan Maxwell, Elder Mathias. 1-4 [doi]
• Automated data verification in a large-scale citizen science project: A case studyJun Yu, Steve Kelling, Jeff Gerbracht, Weng-Keen Wong. 1-8 [doi]
• Verification and user experience of high data rate bandwidth-on-demand networksJimmy Cullen, Richard Hughes-Jones, Ralph Spencer. 1-2 [doi]
• Discovering drug targets for neglected diseases using a pharmacophylogenomic cloud workflowKary A. C. S. Ocaña, Daniel de Oliveira, Jonas Dias, Eduardo S. Ogasawara, Marta Mattoso. 1-8 [doi]
• Enabling large genomic data transfers using nation-wide and international dynamic lightpathsJan Bot, Migiel de Vos, Sander Boele, Marcel J. T. Reinders, Joost N. Kok. 1-2 [doi]
• Temporal representation for scientific data provenancePeng Chen, Beth Plale, Mehmet S. Aktas. 1-8 [doi]
• Towards semantically-enabled exploration and analysis of environmental ecosystemsPing Wang, Linyun Fu, Evan W. Patton, Deborah L. McGuinness, F. Joshua Dein, R. Sky Bristol. 1-8 [doi]
• A system for management of Computational Fluid Dynamics simulations for civil engineeringPeter Sempolinski, Douglas Thain, Daniel Wei, Ahsan Kareem. 1-8 [doi]
• Towards the gamification of well-being measuresMargeret Hall, Steven O. Kimbrough, Christian Haas, Christof Weinhardt, Simon Caton. 1-8 [doi]
• MIM: A Minimum Information Model vocabulary and framework for Scientific Linked DataMatthew Gamble, Carole A. Goble, Graham Klyne, Jun Zhao. 1-8 [doi]
• RightField: Semantic enrichment of Systems Biology data using spreadsheetsKatherine Wolstencroft, Stuart Owen, Carole A. Goble, Quyen Nguyen, Olga Krebs, Wolfgang Müller 0001. 1-8 [doi]
• Velo and REXAN - Integrated data management and high speed analysis for experimental facilitiesKerstin Kleese van Dam, James P. Carson, Abigail L. Corrigan, Daniel R. Einstein, Zoe Guillen, Brandi Heath, Andrew P. Kuprat, Ingela Lanekoff, Carina Lansing, Julia Laskin, Dongsheng Li, Yan Liu, Matthew Marshall, Erin Miller, Galya Orr, Paulo Pinheiro da Silva, Seun Ryu, Craig Szymanski, Mathew Thomas. 1-9 [doi]
• IPOL: Reviewed publication and public testing of research softwareNicolas Limare, Laurent Oudre, Pascal Getreuer. 1-8 [doi]
• Happy or not: Generating topic-based emotional heatmaps for Culturomics using CyberGISEric Shook, Kalev Leetaru, Guofeng Cao, Anand Padmanabhan, Shaowen Wang. 1-6 [doi]
• Partial replica selection for spatial datasetsYun Tian, Philip J. Rhodes. 1-10 [doi]
• Enabling scientific data sharing and re-useRobert Darby, Simon C. Lambert, Brian Matthews, Michael D. Wilson, K. Gitmans, Suenje Dallmeier-Tiessen, Salvatore Mele, J. Suhonen. 1-8 [doi]
• Overview of the TriBITS lifecycle model: A Lean/Agile software lifecycle model for research-based computational science and engineering softwareRoscoe A. Bartlett, Michael A. Heroux, James M. Willenbring. 1-8 [doi]
• WorkWays: Interactive workflow-based science gatewaysHoang Nguyen, David Abramson. 1-8 [doi]
• Provenance analysis: Towards quality provenanceYou-Wei Cheah, Beth Plale. 1-8 [doi]
• An integrated science portal for collaborative compute and data intensive protein structure studiesIan Stokes-Rees, Daniel O'Donovan, Peter Doherty, Meghan Porter-Mahoney, Piotr Sliz. 1-8 [doi]
• Remote phenology: Applying machine learning to detect phenological patterns in a cerrado savannaJurandy Almeida, Jefersson Alex dos Santos, Bruna Alberton, Ricardo da Silva Torres, Leonor Patricia C. Morellato. 1-8 [doi]
• Towards next generations of software for distributed infrastructures: The European Middleware InitiativeCristina Aiftimiei, Alberto Aimar, Andrea Ceccanti, Marco Cecchi, Alberto Di Meglio, Florida Estrella, Patrick Fuhrmam, Emidio Giorgio, Balázs Kónya, Laurence Field, Jon Kerr Nilsen, Morris Riedel, John White. 1-10 [doi]
• Service-based integration of human users in workflow-driven scientific experimentsDimka Karastoyanova, Dimitrios Dentsas, David Schumm, Mirko Sonntag, Lina Sun, Karolina Vukojevic. 1-8 [doi]
• MARISSA: MApReduce Implementation for Streaming Science ApplicationsElif Dede, Zacharia Fadika, Jessica Hartog, Madhusudhan Govindaraju, Lavanya Ramakrishnan, Dan Gunter, Shane Richard Canon. 1-8 [doi]
• Collaborative information management in scientific research processesShirley Y. Crompton, Brian Matthews, Erica Y. Yang, Cameron Neylon, Simon J. Coles. 1-7 [doi]
• Towards a quantitative academic internationalization assessment of Brazilian research groupsEvelyn Perez Cervantes, Jesús P. Mena-Chalco, Roberto Marcondes Cesar Jr.. 1-8 [doi]
• X-ray imaging software tools for HPC clusters and the CloudDarren Thompson, Alex Khassapov, Yakov Nesterets, Timur Gureyev, John A. Taylor. 1-7 [doi]
• High-performance data management for genome sequencing centers using Globus Online: A case studyDinanath Sulakhe, Rajkumar Kettimuthu, Utpal Dave. 1-6 [doi]
• WorkflowSim: A toolkit for simulating scientific workflows in distributed environmentsWeiwei Chen, Ewa Deelman. 1-8 [doi]
• Digitization and search: A non-traditional use of HPCLiana Diesendruck, Luigi Marini, Rob Kooper, Mayank Kejriwal, Kenton McHenry. 1-6 [doi]
• BIGS: A framework for large-scale image processing and analysis over distributed and heterogeneous computing resourcesRaúl Ramos-Pollán, Fabio A. González, Juan C. Caicedo, Angel Cruz-Roa, Jorge E. Camargo, Jorge A. Vanegas, Santiago A. Perez, José David Bermeo, Juan Sebastian Otalora, Paola K. Rozo, John E. Arevalo. 1-8 [doi]
• A new optimization phase for scientific workflow management systemsSonja Holl, Olav Zimmermann, Martin Hofmann-Apitius. 1-8 [doi]
• On realizing the concept study ScienceSoft of the European Middleware Initiative: Open Software for Open ScienceAlberto Di Meglio, Florida Estrella, Morris Riedel. 1-8 [doi]