Table of Contents

• GOfox: Semantics-based simplified hierarchical classification and interactive visualization to support GO enrichment analysisEdison Ong, Yongqun He. [doi]
• An ontological analysis of diagnostic assertions in electronic healthcare recordsWerner Ceusters, William R. Hogan. [doi]
• Compound matching of biomedical ontologiesDaniela Oliveira, Catia Pesquita. [doi]
• ChEBI for systems biology and metabolic modellingJanna Hastings, Neil Swainston, Venkatesh Muthukrishnan, Namrata Kale, Adriano Dekker, Gareth Owen, Steve Turner, Pedro Mendes, Christoph Steinbeck. [doi]
• Ontorat: Automatic generation and editing of ontology termsYongqun He, Jie Zheng, Yu Lin. [doi]
• Structured data acquisition with ontology-based web formsRafael S. Gonçalves, Samson W. Tu, Csongor I. Nyulas, Michael J. Tierney, Mark A. Musen. [doi]
• Development of a discharge ontology to support postanesthesia discharge decision makingLucy L. Wang, Yong Choi. [doi]
• Scaffolding the mitochondrial Disease Ontology from extant knowledge sourcesJennifer D. Warrender, Phillip Lord. [doi]
• Can SNOMED CT be squeezed without losing its shape?Pablo López-García, Stefan Schulz. [doi]
• Ontoanimal tools for reusing ontologies, generating and editing ontology terms, and dereferencing ontology termsYongqun He, Jie Zheng, Yu Lin. [doi]
• Highly literate ontologiesPhillip Lord, Jennifer D. Warrender. [doi]
• FAIRDOM approach for semantic interoperability of systems biology data and modelsOlga Krebs, Katy Wolstencroft, Natalie J. Stanford, Norman Morrison, Martin Golebiewski, Stuart Owen, Quyen Nguyen, Jacky L. Snoep, Wolfgang Mueller, Carole A. Goble. [doi]
• Modeling and tools for supporting post-coordination in ICD-11Csongor I. Nyulas, Samson W. Tu, Tania Tudorache, Mark A. Musen. [doi]
• Using Aber-OWL for fast and scalable reasoning over BioPortal ontologiesLuke Slater, Georgios V. Gkoutos, Paul N. Schofield, Robert Hoehndorf. [doi]
• 2015 Disease Ontology update: DO's expanded curation activities to connect disease-related dataElvira Mitraka, Lynn M. Schriml. [doi]
• Mapping WordNet to the Basic Formal Ontology using the KYOTO ontologySelja Seppälä. [doi]
• Formal representation of disorder associations in SNOMED CTEdward Cheetham, Yongsheng Gao, Bruce Goldberg, Robert R. Hausam, Stefan Schulz. [doi]
• Investigating term reuse and overlap in biomedical ontologiesMaulik R. Kamdar, Tania Tudorache, Mark A. Musen. [doi]
• Medical and transmission vector vocabulary alignment with Schema.orgWilliam Smith, Alan Chappell, Courtney Corley. [doi]
• OWL-based form generation and structured data acquisitionRafael S. Gonçalves, Csongor I. Nyulas, Samson W. Tu, Mark A. Musen. [doi]
• BIM: an open ontology for the annotation of biomedical imagesAhmad C. Bukhari, Mate Levente Nagy, Michael Krauthammer, Paolo Ciccarese, Christopher J. O. Baker. [doi]
• Towards visualizing the mapping incoherences in BioportalCatarina Martins, Ernesto Jiménez-Ruiz, Emanuel Santos, Catia Pesquita. [doi]
• EDN-LD: A simple linked data toolJames A. Overton. [doi]
• Disease Compass - a navigation system for disease knowledge based on ontology and linked data techniquesKouji Kozaki, Yuki Yamagata, Riichiro Mizoguchi, Takeshi Imai, Kazuhiko Ohe. [doi]
• An ontology-based approach for SNOMED CT translationMário J. Silva, Tiago Chaves, Bárbara Simões. [doi]
• Ontology-driven patient history questionnairesJonathan P. Bona, Gunther Kohn, Alan Ruttenberg. [doi]
• Analysis of the evolution of ontologies using OQuaRE: application to EDAMManuel Quesada-Martínez, Astrid Duque-Ramos, Jesualdo Tomás Fernández-Breis. [doi]
• Replacing EHR structured data with explicit representationsJonathan P. Bona, Werner Ceusters. [doi]
• NCBO BioPortal version 4Ray W. Fergerson, Paul R. Alexander, Michael Dorf, Rafael S. Gonçalves, Manuel Salvadores, Alex Skrenchuk, Jennifer Vendetti, Mark A. Musen. [doi]
• Representing bioinformatics datatypes using the OntoDT ontologyPance Panov, Larisa N. Soldatova, Saso Dzeroski. [doi]
• Formalization of indicators of diagnostic performance in a realist ontologyAdrien Barton, Régis Duvauferrier, Anita Burgun. [doi]
• ROBOT: A command-line tool for ontology developmentJames A. Overton, Heiko Dietze, Shahim Essaid, David Osumi-Sutherland, Christopher J. Mungall. [doi]
• Aboutness: towards foundations for the Information Artifact OntologyBarry Smith, Werner Ceusters. [doi]
• Bridging Vaccine Ontology and NCIt vaccine domain for cancer vaccine data integration and analysisYongqun He, Guoqian Jiang. [doi]
• Improvements to the Drosophila anatomy ontologyMarta Costa, David Osumi-Sutherland, Steven J. Marygold, Nick Brown. [doi]
• Inferring logical definitions using compound ontology matchingDaniela Oliveira, Catia Pesquita. [doi]
• TNM-O an ontology for the Tumor-Node-Metastasis classification of malignant tumors: a study on rectal cancerMartin Boeker, Fábio França, Peter Bronsert, Stefan Schulz. [doi]
• A UML profile for functional modeling applied to the Molecular Function OntologyPatryk Burek, Frank Loebe, Heinrich Herre. [doi]
• Mapping a database schema to the structure of an existing ontologyAnahita Nafissi, Fabio Fiorani, Björn Usadel. [doi]
• Visualization and editing of biomedical ontology alignments in AgreementMakerLightCatarina Martins, Daniel Faria, Catia Pesquita. [doi]
• Using Semantics and NLP in the SMART Protocols RepositoryOlga L. Giraldo, Alexander García Castro, Óscar Corcho. [doi]
• Annotating biomedical ontology terms in electronic health records using crowd-sourcingAndre Lamurias, Vasco Pedro, Luka A. Clarke, Francisco M. Couto. [doi]
• AberOWL: an ontology portal with OWL EL reasoningLuke Slater, Georgios V. Gkoutos, Paul N. Schofield, Robert Hoehndorf. [doi]
• OnToology, a tool for collaborative development of ontologiesAhmad Alobaid, Daniel Garijo, María Poveda-Villalón, Idafen Santana Pérez, Óscar Corcho. [doi]