Abstract is missing.
- Towards a Standard Ontology Metadata ModelHua Min, Stuart Turner, Sherri de Coronado, Brian Davis, Trish Whetzel, Robert R. Freimuth, Harold R. Solbrig, Richard C. Kiefer, Michael Riben, Grace A. Stafford, Lawrence W. Wright, Riki Ohira. [doi]
- SourceData: Making Data DiscoverableNancy George, Sara El-Gebali, Thomas Lemberger. [doi]
- Growth of the Zebrafish Anatomy Ontology: Expanded to Support Adult Morphology and Dynamic Changes in the Early EmbryoCeri E. Van Slyke, Yvonne M. Bradford, Christian Pich 0002. [doi]
- CancerMine: Knowledge Base Construction for Personalised Cancer TreatmentJake Lever, Martin Jones, Steven J. Jones. [doi]
- Towards a Schistosomiasis Ontology (IDOSCHISTO) Extending the Infectious Disease OntologyGaoussou Camara, Sylvie Desprès, Rim Djedidi, Moussa Lo. [doi]
- FoodON: A Global Farm-to-Fork Food OntologyEmma J. Griffiths, Damion M. Dooley, Pier Luigi Buttigieg, Robert Hoehndorf, Fiona S. L. Brinkman, William W. L. Hsiao. [doi]
- Humane OWL: RDF and OWL for HumansJames A. Overton. [doi]
- One Tagger, Many Uses: Illustrating the Power of Ontologies in Dictionary-based Named Entity RecognitionLars Juhl Jensen. [doi]
- How to Summarize Big Knowledge SubjectsLing Zheng, Yehoshua Perl, James Geller, Gai Elhanan. [doi]
- SPARQL2OWL: Towards Bridging the Semantic Gap Between RDF and OWLMona Alshahrani, Hussein Almashouq, Robert Hoehndorf. [doi]
- Building Concordant Ontologies for Drug DiscoveryHande Küçük-McGinty, Saurabh Metha, Yu Lin, Nooshin Nabizadeh, Vasileios Stathias, Dusica Vidovic, Amar Koleti, Christopher Mader, Jianbin Duan, Ubbo Visser, Stephan C. Schürer. [doi]
- Label Embedding Approach for Transfer LearningRasha Obeidat, Xiaoli Z. Fern, Prasad Tadepalli. [doi]
- Opportunities and Challenges Presented by Wikidata in the Context of BiocurationBenjamin M. Good, Timothy Putman, Andrew I. Su, Andra Waagmeester, Sebastian Burgstaller-Muehlbacher, Elvira Mitraka. [doi]
- The Cell Line Ontology Integration and Analysis of the Knowledge of LINCS Cell LinesEdison Ong, Jiangan Xie, Zhaohui Ni, Qingping Liu, Yu Lin, Vasileios Stathias, Caty Chung, Stephan C. Schürer, Yongqun He. [doi]
- An Analysis of Differences in Biological Pathway ResourcesLucy Wang, John Gennari, Neil Abernethy. [doi]
- Reusing the NCBO BioPortal Technology for Agronomy to Build AgroPortalClément Jonquet, Anne Toulet, Elizabeth Arnaud, Sophie Aubin, Esther Dzalé Yeumo Kaboré, Vincent Emonet, John Graybeal, Mark A. Musen, Cyril Pommier, Pierre Larmande. [doi]
- Dealing with Elements of Medical Encounters: an Approach Based on the Ontological RealismFernanda Farinelli, Maurício Barcellos de Almeida, Peter L. Elkin, Barry Smith. [doi]
- Ontobull and BFOConvert: Web-based Programs to Support Automatic Ontology ConversionEdison Ong, Zuoshuang Xiang, Jie Zheng, Barry Smith, Yongqun He. [doi]
- An Ontological Framework for Representing Topological Information in Human AnatomyTakeshi Imai, Emiko Yamada Shinohara, Masayuki Kajino, Ryota Sakurai, Kazuhiko Ohe, Kouji Kozaki, Riichiro Mizoguchi. [doi]
- The UNEP Ontologies and the OBO FoundryBarry Smith, Mark Jensen. [doi]
- Plant Image Segmentation and Annotation with Ontologies in BisQueJustin Preece, Justin Elser, Pankaj Jaiswal, Kristian Kvilekval, Dmitry Fedorov, B. S. Manjunath, Ryan Kitchen, Xu Xu, Dmitrios Trigkakis, Sinisa Todorovic, Seth Carbon. [doi]
- Large-scale Semantic Indexing with Biomedical OntologiesChih-Hsuan Wei, Robert Leaman, Zhiyong Lu. [doi]
- Opportunities and Challenges Presented by Wikidata in the Context of BiocurationBenjamin M. Good, Sebastian Burgstaller-Muehlbacher, Elvira Mitraka, Timothy Putman, Andrew I. Su, Andra Waagmeester. [doi]
- Malaria Study Data Integration and Information Retrieval Based on OBO Foundry OntologiesJie Zheng, Jashon Cade, Brian P. Brunk, David S. Roos, Christian J. Stoeckert Jr., San James, Emmanuel Arinaitwe, Bryan Greenhouse, Grant Dorsey, Steven Sullivan, Jane M. Carlton, Gabriel Carrasco-Escobar, Dionicia Gamboa, Paula Maguina-Mercedes, Joseph Vinetz. [doi]
- Data-driven Agricultural Research for Development: A Need for Data Harmonization Via SemanticsMedha Devare, Céline Aubert, Marie-Angélique Laporte, Léo Valette, Elizabeth Arnaud, Pier Luigi Buttigieg. [doi]
- Qualitative Causal Analyses of Biosimulation ModelsMaxwell Lewis Neal, John H. Gennari, Daniel L. Cook. [doi]
- Planteome Gene Annotation Enrichment AnalysisBotong Qu, Jaden Diefenbaugh, Eugene Zhang, Justin Elser, Pankaj Jaiswal, Seth Carbon, Christopher J. Mungall. [doi]
- The Planteome ProjectLaurel Cooper, Austin Meier, Justin Elser, Justin Preece, Xu Xu, Ryan Kitchen, Botong Qu, Eugene Zhang, Sinisa Todorovic, Pankaj Jaiswal, Marie-Angélique Laporte, Elizabeth Arnaud, Seth Carbon, Chris Mungall, Barry Smith, Georgios V. Gkoutos, John Doonan. [doi]
- NAPRALERT, from a Historical Information Silo to a Linked Resource Able to Address the New Challenges in Natural Products Chemistry and PharmacognosyJonathan Bisson, James McAlpine, James Graham, Guido Pauli. [doi]
- A Quality-Assurance Study of ChEBIHasan Yumak, Ling Chen, Michael Halper, Ling Zheng, Yehoshua Perl, Gai Elhanan. [doi]
- Annotating Germplasm to Planteome Reference OntologiesAustin Meier, Laurel Cooper, Justin Elser, Pankaj Jaiswal, Marie-Angélique Laporte. [doi]
- Enhancing Information Accessibility of Publications with Text Mining and OntologyWeijia Xu, Amit Gupta, Pankaj Jaiswal, Crispin Taylor, Patti Lockhart. [doi]
- Representation of Parts within the Foundational Model of Anatomy OntologyMelissa Clarkson. [doi]
- OOSTT: a Resource for Analyzing the Organizational Structures of Trauma Centers and Trauma SystemsJoseph Utecht, John Judkins, Mathias Brochhausen, Terra Colvin Jr., J. Neil Otte, Nicholas Rogers, Robert Rose, Maria Alvi, Amanda Hicks, Jane Ball, Stephen M. Bowman, Robert T. Maxson, Rosemary Nabaweesi, Rohit Pradhan, Nels D. Sanddal, M. Eduard Tudoreanu, Robert Winchell. [doi]
- The Phenoscape Knowledgebase: Tools and APIs for Computing Across Phenotypes from Evolutionary Diversity and Model OrganismsJames P. Balhoff. [doi]
- Easy Extraction of Terms and Definitions with OWL2TLJohn Judkins, Joseph Utecht, Mathias Brochhausen. [doi]
- Updates to the AberOWL Ontology RepositoryMiguel Ángel Rodríguez-García, Luke Slater, Imane Boudellioua, Paul N. Schofield, Georgios V. Gkoutos, Robert Hoehndorf. [doi]
- An Ontological Representation for the Transtheoretical TheoryHua Min, Robert H. Friedman, Julie A. Wright. [doi]
- uc_FIDO: Unambiguous Characterization of Food Interactions with Drugs OntologyConstantine Spyrou, Matthew Lange. [doi]
- Semantic Digitization of Experimental Data in Biological SciencesSaurabh Raghuvanshi. [doi]
- Visualizing the "Big Picture" of Change in NCIt's Biological ProcessesYehoshua Perl, Christopher Ochs, Sherri de Coronado, Nicole Thomas. [doi]
- Scalable Text Mining Assisted Curation of PTM Proteoforms in the Protein OntologyKaren E. Ross, Darren A. Natale, Cecilia N. Arighi, Sheng-Chih Chen, Hongzhan Huang, Gang Li, Jia Ren, Michael Wang, K. Vijay-Shanker, Cathy H. Wu. [doi]
- Measuring the Importance of Annotation Granularity to the Detection of Semantic Similarity Between Phenotype ProfilesPrashanti Manda, James P. Balhoff, Todd J. Vision. [doi]
- To MIREOT or not to MIREOT? A Case Study of the Impact of Using MIREOT in the Experimental Factor Ontology (EFO)Luke Slater, Georgios V. Gkoutos, Paul N. Schofield, Robert Hoehndorf. [doi]
- Global Agricultural Concept Scheme: A Hub for Agricultural VocabulariesCaterina Caracciolo, Tom Baker, Elizabeth Arnaud. [doi]
- Enhancing the Human Phenotype Ontology for Use by the LaypersonNicole Vasilevsky, Mark Engelstad, Erin Foster, Chris Mungall, Peter N. Robinson, Sebastian Köhler 0001, Melissa Haendel. [doi]
- uc_Eating: Ontology for Unambiguous Characterization of Eating and Food HabitsKimiya Taji, Matthew Lange. [doi]
- An OBI Ontology Datum Proof SheetDamion M. Dooley, Emma J. Griffiths, Fiona S. L. Brinkman, William W. L. Hsiao. [doi]
- Multi-species Ontologies of the Craniofacial Musculoskeletal SystemJosé Leonardo Villaraza Mejino Jr., James F. Brinkley, Timothy C. Cox, Landon Detwiler. [doi]
- Definition Coverage in the OBO Foundry Ontologies: The Big PictureDaniel R. Schlegel, Selja Seppälä, Peter L. Elkin. [doi]
- Environmental Semantics for Sustainable Development in an Interconnected BiospherePier Luigi Buttigieg, Mark Jensen, Ramona L. Walls, Christopher J. Mungall. [doi]
- Disease Named Entity Recognition Using NCBI CorpusThomas Hahn, Hidayat Ur Rahman, Richard S. Segall. [doi]
- Supporting Database Annotations and Beyond with the Evidence & Conclusion Ontology (ECO)Marcus C. Chibucos, Suvarna Nadendla, James Munro, Elvira Mitraka, Dustin Olley, Nicole Vasilevsky, Matthew H. Brush, Michelle G. Giglio. [doi]
- Performance Evaluation Clinical Task Ontology(PECTO)Jose F. Florez-Arango, Santiago Patiño-Giraldo, Jack W. Smith, M. Sriram Iyengar. [doi]
- Cycles of Scientific Investigation in Discourse - Machine Reading Methods for the Primary Research Contributions of a PaperGully A. P. C. Burns, Anita de Waard, Pradeep Dasigi, Eduard H. Hovy. [doi]
- Natural Language Definitions for the Leukemia Knowledge DomainAmanda Damasceno de Souza, Mauricio Barcellos Almeida. [doi]
- Comparison of Ontology Mapping Techniques to Map Plant Trait OntologiesMarie-Angélique Laporte, Léo Valette, Laurel Cooper, Chris Mungall, Austin Meier, Pankaj Jaiswal, Elizabeth Arnaud. [doi]
- Towards Designing an Ontology Encompassing the Environment-agriculture-food-diet-health Knowledge Spectrum for Food System Sustainability and ResilienceRuthie Musker, Matthew Lange, Allan Hollander, Patrick Huber, Nathaniel Springer, Courtney Riggle, James Quinn, Thomas Tomich. [doi]
- Building a Molecular Glyco-phenotype Ontology to Decipher Undiagnosed DiseasesJean-Philippe Gourdine, Thomas Metz, David Koeller, Matthew H. Brush, Melissa Haendel. [doi]
- BioCconvert: A Conversion Tool Between BioC and PubAnnotationDonald C. Comeau, Rezarta Islamaj Dogan, Sun Kim, Chih-Hsuan Wei, W. John Wilbur, Zhiyong Lu. [doi]
- The ImmPort Antibody OntologyWilliam Duncan, Travis Allen, Jonathan P. Bona, Olivia Helfer, Barry Smith, Alan Ruttenberg, Alexander D. Diehl. [doi]
- Sustainable Development Goals Interface OntologyMark Jensen. [doi]
- Text Mining for Drug Development: Gathering Insights to Support Decision MakingSherri Matis-Mitchell. [doi]
- Use of Text Mining for Experimental Factor Ontology Coverage Expansion in the Scope of Target ValidationSenay Kafkas, Ian Dunham, Helen E. Parkinson, Johanna R. McEntyre. [doi]
- Adding Evidence Type Representation to DIDEOMathias Brochhausen, Philip E. Empey, Jodi Schneider, William R. Hogan, Richard D. Boyce. [doi]
- A Web Application for Extracting Key Domain Information for Scientific Publications Using OntologyWeijia Xu, Amit Gupta, Pankaj Jaiswal, Crispin Taylor, Patti Lockhart. [doi]
- Defining and Sustaining Populations and CommunitiesRamona L. Walls. [doi]
- A Semantic Web Representation of Entire PopulationsDaniel Welch 0003, Amanda Hicks, Josh Hanna, William R. Hogan. [doi]
- Enhancing SciENcv through Semantic Research Profile Integration with the VIVO-ISF OntologyMarijane White, Matthew H. Brush, Shahim Essaid, Robin Champieux, Adrienne Zell, Melissa Haendel, Colin Grove, Syeda Momina Tabish, David Eichmann. [doi]
- Analysis of SNOMED "Bleeding" Concepts & TermsJonathan P. Bona, Selja Seppälä, Werner Ceusters. [doi]
- Dealing with Social and Legal Entities in the Obstetric and Neonatal DomainFernanda Farinelli, Maurício Barcellos de Almeida, Peter L. Elkin, Barry Smith. [doi]
- Uc_Sense: An Ontology for Scientifically-based Unambiguous Characterization of Sensory ExperiencesAaron Baer, Matthew Lange. [doi]
- Collaborative Workspaces for Pathway CurationFunda Durupinar-Babur, Metin Can Siper, Ugur Dogrusoz, Istemi Bahceci, Ozgun Babur, Emek Demir. [doi]
- Cardiovascular Health and Physical Activity: A Model for Health Promotion and Decision Support OntologiesVimala Ponna, Aaron Baer, Matthew Lange. [doi]
- Ten Simple Rules for Biomedical Ontology DevelopmentMélanie Courtot, James Malone, Chris Mungall. [doi]
- Gold-Standard Ontology-Based Annotation of Concepts in Biomedical Text in the CRAFT Corpus: Updates and ExtensionsMichael Bada, Nicole Vasilevsky, Melissa Haendel, Lawrence Hunter. [doi]
- SEPIO: A Semantic Model for the Integration and Analysis of Scientific EvidenceMatthew H. Brush, Kent Shefchek, Melissa Haendel. [doi]
- Towards an Ontology of SchizophreniaFumiaki Toyoshima. [doi]
- A Realist Representation of Social Identity DataAmanda Hicks. [doi]
- Improving the Semantics of Drug Prescriptions with a Realist OntologyJean-François Ethier, Ryeyan Taseen, Luc Lavoie, Adrien Barton. [doi]
- Ignet: A Centrality and INO-based Web System for Analyzing and Visualizing Literature-mined NetworksArzucan Özgür, Junguk Hur, Zuoshuang Xiang, Edison Ong, Dragomir R. Radev, Yongqun He. [doi]
- Crowdsourcing Protein Family Database CurationMatt Jeffryes, Maria Liakata, Alex Bateman. [doi]
- MutD - A PubMed Scale Resource for Protein Mutation-Disease Relations through Bio-Medical Literature MiningRavikumar Komandur Elayavilli, Majid Rastegar-Mojarad, Hongfang Liu. [doi]
- Identifying Missing Hierarchical Relations in SNOMED CT from Logical Definitions Based on the Lexical Features of Concept NamesOlivier Bodenreider. [doi]
- EGO: A Biomedical Ontology for Integrative Epigenome Representation and AnalysisYongqun He, Zhaohui S. Qin, Jie Zheng. [doi]
- uc_Milk: An Ontology for Scientifically-based Unambiguous Characterization of Mammalian Milk, their Composition and the Biological Processes Giving Rise to their CreationEmeline Colet, Matthew Lange. [doi]
- A Descriptive Delta for Identifying Changes in SNOMED CTChristopher Ochs, Yehoshua Perl, Gai Elhanan, James T. Case. [doi]
- The Zebrafish Experimental Conditions Ontology Systemizing Experimental Descriptions in ZFINYvonne M. Bradford, Ceri E. Van Slyke, Sabrina Toro, Sridhar Ramachandran. [doi]