Table of Contents

• Cell Lineage Tracing in Lens-Free Microscopy VideosMarkus Rempfler, Sanjeev Kumar, Valentin Stierle, Philipp Paulitschke, Bjoern Andres, Bjoern H. Menze. 3-11 [doi]
• Separation of Transmitted Light and Scattering Components in Transmitted MicroscopyMihoko Shimano, Ryoma Bise, Yinqiang Zheng, Imari Sato. 12-20 [doi]
• Neuron Segmentation Using Deep Complete Bipartite NetworksJianxu Chen, Sreya Banerjee, Abhinav Grama, Walter J. Scheirer, Danny Z. Chen. 21-29 [doi]
• Cell Encoding for Histopathology Image ClassificationXiaoshuang Shi, Fuyong Xing, Yuanpu Xie, Hai Su, Lin Yang. 30-38 [doi]
• Endoscopic Depth Measurement and Super-Spectral-Resolution ImagingJianyu Lin, Neil T. Clancy, Yang Hu, Ji Qi, Taran Tatla, Danail Stoyanov, Lena Maier-Hein, Daniel S. Elson. 39-47 [doi]
• Computational Immunohistochemistry: Recipes for Standardization of ImmunostainingNuri Murat Arar, Pushpak Pati, Aditya Kashyap, Anna Fomitcheva Khartchenko, Orcun Goksel, Govind V. Kaigala, Maria Gabrani. 48-55 [doi]
• Two-Stream Bidirectional Long Short-Term Memory for Mitosis Event Detection and Stage Localization in Phase-Contrast Microscopy ImagesYunxiang Mao, Zhaozheng Yin. 56-64 [doi]
• Refocusing Phase Contrast Microscopy ImagesLiang Han, Zhaozheng Yin. 65-74 [doi]
• Semi-supervised Segmentation of Optic Cup in Retinal Fundus Images Using Variational AutoencoderSuman Sedai, Dwarikanath Mahapatra, Sajini Hewavitharanage, Stefan Maetschke, Rahil Garnavi. 75-82 [doi]
• QuaSI: Quantile Sparse Image Prior for Spatio-Temporal Denoising of Retinal OCT DataFranziska Schirrmacher, Thomas Köhler, Lennart Husvogt, James G. Fujimoto, Joachim Hornegger, Andreas K. Maier. 83-91 [doi]
• Fast Background Removal Method for 3D Multi-channel Deep Tissue Fluorescence ImagingChenchen Li, Xiaowei Li, Hongji Cao, He Jiang, Xiaotie Deng, Danny Z. Chen, Lin Yang, Zhifeng Shao. 92-99 [doi]
• Fast Estimation of Haemoglobin Concentration in Tissue Via Wavelet DecompositionGeoffrey Jones, Neil T. Clancy, Xiaofei Du, Maria Robu, Simon R. Arridge, Daniel S. Elson, Danail Stoyanov. 100-108 [doi]
• Efficient Reconstruction of Holographic Lens-Free Images by Sparse Phase RecoveryBenjamin D. Haeffele, Richard Stahl, Geert Vanmeerbeeck, René Vidal. 109-117 [doi]
• Quality Assessment of Retinal Hyperspectral Images Using SURF and Intensity FeaturesFaten M'hiri, Claudia Chevrefils, Jean-Philippe Sylvestre. 118-125 [doi]
• Isotropic Reconstruction of 3D Fluorescence Microscopy Images Using Convolutional Neural NetworksMartin Weigert, Loïc Royer, Florian Jug, Gene Myers. 126-134 [doi]
• Deep Learning for Isotropic Super-Resolution from Non-isotropic 3D Electron MicroscopyLarissa Heinrich, John A. Bogovic, Stephan Saalfeld. 135-143 [doi]
• Histological Detection of High-Risk Benign Breast Lesions from Whole Slide ImagesAkif Burak Tosun, Luong Nguyen, Nathan Ong, Olga Navolotskaia, Gloria Carter, Jeffrey L. Fine, D. Lansing Taylor, S. Chakra Chennubhotla. 144-152 [doi]
• Accurate Correspondence of Cone Photoreceptor Neurons in the Human Eye Using Graph Matching Applied to Longitudinal Adaptive Optics ImagesJianfei Liu, Haewon Jung, Johnny Tam. 153-161 [doi]
• Active Learning and Proofreading for Delineation of Curvilinear StructuresAgata Mosinska, Jakub Tarnawski, Pascal Fua. 165-173 [doi]
• Tracking the Aortic Lumen Geometry by Optimizing the 3D Orientation of Its Cross-sectionsLuis Álvarez, Agustín Trujillo-Pino, Carmelo Cuenca, Esther González, Julio Esclarín, Luis Gómez, Luis Mazorra, Miguel Alemán-Flores, Pablo G. Tahoces, José M. Carreira-Villamor. 174-181 [doi]
• BRANCH: Bifurcation Recognition for Airway Navigation based on struCtural cHaracteristicsMali Shen, Stamatia Giannarou, Pallav Shah, Guang-Zhong Yang. 182-189 [doi]
• Anatomy-Driven Modelling of Spatial Correlation for Regularisation of Arterial Spin Labelling ImagesDavid Owen 0001, Andrew Melbourne, Zach Eaton-Rosen, David Thomas, Neil Marlow, Jonathan D. Rohrer, Sébastien Ourselin. 190-197 [doi]
• Tracking and Segmentation of the Airways in Chest CT Using a Fully Convolutional NetworkQier Meng, Holger R. Roth, Takayuki Kitasaka, Masahiro Oda, Junji Ueno, Kensaku Mori. 198-207 [doi]
• Automatic Labeling of Vascular Structures with Topological Constraints via HMMXingce Wang, Yue Liu, Zhongke Wu, Xiao Mou, Mingquan Zhou, Miguel A. González Ballester, Chong Zhang. 208-215 [doi]
• Biomechanical Patient-Specific Model of the Respiratory System Based on 4D CT Scans and Controlled by Personalized Physiological ComplianceMatthieu Giroux, Hamid Ladjal, Michael Beuve, Behzad Shariat. 216-223 [doi]
• CT Image Enhancement for Feature Detection and LocalizationPietro Nardelli, James C. Ross, Raúl San José Estépar. 224-232 [doi]
• Information Theoretic Measurement of Blood Flow Complexity in Vessels and Aneurysms: Interlacing Complexity IndexJose M. Pozo, Arjan J. Geers, Alejandro F. Frangi. 233-241 [doi]
• Globally-Optimal Anatomical Tree Extraction from 3D Medical Images Using Pictorial Structures and Minimal PathsZahra Mirikharaji, Mengliu Zhao, Ghassan Hamarneh. 242-250 [doi]
• Semi-supervised Learning for Network-Based Cardiac MR Image SegmentationWenjia Bai, Ozan Oktay, Matthew Sinclair, Hideaki Suzuki, Martin Rajchl, Giacomo Tarroni, Ben Glocker, Andrew P. King, Paul M. Matthews, Daniel Rueckert. 253-260 [doi]
• A Localized Statistical Motion Model as a Reproducing Kernel for Non-rigid Image RegistrationChristoph Jud, Alina Giger, Robin Sandkühler, Philippe C. Cattin. 261-269 [doi]
• Efficient Deformable Motion Correction for 3-D Abdominal MRI Using Manifold RegressionXin Chen, Daniel R. Balfour, Paul K. Marsden, Andrew J. Reader, Claudia Prieto, Andrew P. King. 270-278 [doi]
• Flow Network Based Cardiac Motion Tracking Leveraging Learned Feature MatchingNripesh Parajuli, Allen Lu, John C. Stendahl, Maria Zontak, Nabil Boutagy, Imran Alkhalil, Melissa Eberle, Ben A. Lin, Matthew O'Donnell, Albert J. Sinusas, James S. Duncan. 279-286 [doi]
• Automatic 3D Cardiovascular MR Segmentation with Densely-Connected Volumetric ConvNetsLequan Yu, Jie-Zhi Cheng, Qi Dou, Xin Yang, Hao Chen 0011, Jing Qin, Pheng-Ann Heng. 287-295 [doi]
• Predicting Slice-to-Volume Transformation in Presence of Arbitrary Subject MotionBenjamin Hou, Amir Alansary, Steven G. McDonagh, Alice Davidson, Mary A. Rutherford, Joseph V. Hajnal, Daniel Rueckert, Ben Glocker, Bernhard Kainz. 296-304 [doi]
• Detection and Characterization of the Fetal Heartbeat in Free-hand Ultrasound Sweeps with Weakly-supervised Two-streams Convolutional NetworksYuan Gao, J. Alison Noble. 305-313 [doi]
• Retrospective Head Motion Estimation in Structural Brain MRI with 3D CNNsJuan Eugenio Iglesias, Garikoitz Lerma-Usabiaga, Luis C. García-Peraza-Herrera, Sara Martinez, Pedro M. Paz-Alonso. 314-322 [doi]
• Learning-Based Spatiotemporal Regularization and Integration of Tracking Methods for Regional 4D Cardiac Deformation AnalysisAllen Lu, Maria Zontak, Nripesh Parajuli, John C. Stendahl, Nabil Boutagy, Melissa Eberle, Imran Alkhalil, Matthew O'Donnell, Albert J. Sinusas, James S. Duncan. 323-331 [doi]
• Fully Automated Segmentation-Based Respiratory Motion Correction of Multiplanar Cardiac Magnetic Resonance Images for Large-Scale DatasetsMatthew Sinclair, Wenjia Bai, Esther Puyol-Antón, Ozan Oktay, Daniel Rueckert, Andrew P. King. 332-340 [doi]
• Temporal HeartNet: Towards Human-Level Automatic Analysis of Fetal Cardiac Screening VideoWeilin Huang, Christopher P. Bridge, J. Alison Noble, Andrew Zisserman. 341-349 [doi]
• Longitudinal Analysis Using Personalised 3D Cardiac Models with Population-Based Priors: Application to Paediatric CardiomyopathiesRoch Molléro, Hervé Delingette, Manasi Datar, Tobias Heimann, Jakob A. Hauser, Dilveer Panesar, Alexander Jones, Andrew Mayall Taylor, Marcus Kelm, Titus Kühne, Marcello Chinali, Gabriele Rinelli, Nicholas Ayache, Xavier Pennec, Maxime Sermesant. 350-358 [doi]
• Intraoperative Organ Motion Models with an Ensemble of Conditional Generative Adversarial NetworksYipeng Hu, Eli Gibson, Tom Vercauteren, Hashim Uddin Ahmed, Mark Emberton, Caroline M. Moore, J. Alison Noble, Dean C. Barratt. 368-376 [doi]
• CardiacNET: Segmentation of Left Atrium and Proximal Pulmonary Veins from MRI Using Multi-view CNNAliasghar Mortazi, Rashed Karim, Kawal S. Rhode, Jeremy Burt, Ulas Bagci. 377-385 [doi]
• Groupwise Registration of MR Brain Images Containing Tumors via Spatially Constrained Low-Rank Based Image RecoveryZhenyu Tang, Yue Cui, Bo Jiang. 397-405 [doi]
• Deep Correlational Learning for Survival Prediction from Multi-modality DataJiawen Yao, Xinliang Zhu, Feiyun Zhu, JunZhou Huang. 406-414 [doi]
• Compressed Sensing on Multi-pinhole Collimator SPECT Camera for Sentinel Lymph Node BiopsyCarlo Seppi, Uri Nahum, Peter A. von Niederhäusern, Simon Pezold, Michael Rissi, Stephan K. Haerle, Philippe C. Cattin. 415-423 [doi]
• Personalized Pancreatic Tumor Growth Prediction via Group LearningLing Zhang, Le Lu, Ronald M. Summers, Electron Kebebew, Jianhua Yao. 424-432 [doi]
• Boundary-Aware Fully Convolutional Network for Brain Tumor SegmentationHaocheng Shen, Ruixuan Wang, Jianguo Zhang, Stephen J. McKenna. 433-441 [doi]
• Field Effect Induced Organ Distension (FOrge) Features Predicting Biochemical Recurrence from Pre-treatment Prostate MRISoumya Ghose, Rakesh Shiradkar, Mirabela Rusu, Jhimli Mitra, Rajat Thawani, Michael D. Feldman, Amar Gupta, Andrei Purysko, Lee Ponsky, Anant Madabhushi. 442-449 [doi]
• Multi-label Inductive Matrix Completion for Joint MGMT and IDH1 Status Prediction for Glioma PatientsLei Chen, Han Zhang, Kim-Han Thung, Luyan Liu, Junfeng Lu, Jinsong Wu, Qian Wang 0001, Dinggang Shen. 450-458 [doi]
• Radiographic-Deformation and Textural Heterogeneity (r-DepTH): An Integrated Descriptor for Brain Tumor PrognosisPrateek Prasanna, Jhimli Mitra, Niha Beig, Sasan Partovi, Gagandeep Singh, Marco Pinho, Anant Madabhushi, Pallavi Tiwari. 459-467 [doi]
• RADIomic Spatial TexturAl descripTor (RADISTAT): Characterizing Intra-tumoral Heterogeneity for Response and Outcome PredictionJacob Antunes, Prateek Prasanna, Anant Madabhushi, Pallavi Tiwari, Satish Viswanath. 468-476 [doi]
• Locally Affine Diffeomorphic Surface Registration for Planning of Metopic Craniosynostosis SurgeryAntonio R. Porras, Beatriz Paniagua, Andinet Enquobahrie, Scott Ensel, Hina Shah, Robert T. Keating, Gary F. Rogers, Marius George Linguraru. 479-487 [doi]
• A Time Saver: Optimization Approach for the Fully Automatic 3D Planning of Forearm OsteotomiesFabio Carrillo, Lazaros Vlachopoulos, Andreas Schweizer, Ladislav Nagy, Jess Gerrit Snedeker, Philipp Fürnstahl. 488-496 [doi]
• DARWIN: Deformable Patient Avatar Representation With Deep Image NetworkVivek Kumar Singh, Kai Ma, Birgi Tamersoy, Yao-Jen Chang, Andreas Wimmer, Thomas O'Donnell, Terrence Chen. 497-504 [doi]
• Simultaneous Recognition and Pose Estimation of Instruments in Minimally Invasive SurgeryThomas Kurmann, Pablo Márquez-Neila, Xiaofei Du, Pascal Fua, Danail Stoyanov, Sebastian Wolf, Raphael Sznitman. 505-513 [doi]
• DejaVu: Intra-operative Simulation for Surgical Gesture RehearsalNazim Haouchine, Danail Stoyanov, Frédérick Roy, Stephane Cotin. 523-531 [doi]
• An Optimal Control Approach for High Intensity Focused Ultrasound Self-Scanning Treatment PlanningNadia Möri, Laura Gui, Christoph Jud, Orane Lorton, Rares Salomir, Philippe C. Cattin. 532-539 [doi]
• A Mixed-Reality Approach to Radiation-Free Training of C-arm Based SurgeryPhilipp Stefan, Séverine Habert, Alexander Winkler, Marc Lazarovici, Julian Fürmetz, Ulrich Eck, Nassir Navab. 540-547 [doi]
• Image-Driven Stochastic Identification of Boundary Conditions for Predictive SimulationIgor Peterlík, Nazim Haouchine, Lukás Rucka, Stéphane Cotin. 548-556 [doi]
• Toward Computer-Assisted Planning for Interstitial Laser Ablation of Malignant Brain Tumors Using a Tubular Continuum RobotJosephine Granna, Arya Nabavi, Jessica Burgner-Kahrs. 557-565 [doi]
• Providing Effective Real-Time Feedback in Simulation-Based Surgical TrainingXingjun Ma, Sudanthi N. R. Wijewickrema, Yun Zhou 0002, Shuo Zhou, Stephen O'Leary, James Bailey. 566-574 [doi]
• Deep Neural Networks Predict Remaining Surgery Duration from Cholecystectomy VideosIvan Aksamentov, Andru Putra Twinanda, Didier Mutter, Jacques Marescaux, Nicolas Padoy. 586-593 [doi]
• UV Exposed Optical Fibers with Frequency Domain Reflectometry for Device Tracking in Intra-arterial ProceduresFrancois Parent, Maxime Gerard, Raman Kashyap, Samuel Kadoury. 594-601 [doi]
• Improving Needle Detection in 3D Ultrasound Using Orthogonal-Plane Convolutional NetworksArash Pourtaherian, Farhad Ghazvinian Zanjani, Svitlana Zinger, Nenad Mihajlovic, Gary Ng, Hendrikus Korsten, Peter de With. 610-618 [doi]
• Motion-Compensated Autonomous Scanning for Tumour Localisation Using Intraoperative UltrasoundLin Zhang 0021, Menglong Ye, Stamatia Giannarou, Philip Pratt, Guang-Zhong Yang. 619-627 [doi]
• Deep Learning for Sensorless 3D Freehand Ultrasound ImagingRaphael Prevost, Mehrdad Salehi, Julian Sprung, Robert Bauer, Wolfgang Wein. 628-636 [doi]
• Ultrasonic Needle Tracking with a Fibre-Optic Ultrasound Transmitter for Guidance of Minimally Invasive Fetal SurgeryWenfeng Xia, Sacha Noimark, Sébastien Ourselin, Simeon J. West, Malcolm C. Finlay, Anna L. David, Adrien E. Desjardins. 637-645 [doi]
• Learning CNNs with Pairwise Domain Adaption for Real-Time 6DoF Ultrasound Transducer Detection and Tracking from X-Ray ImagesJiannan Zheng, Shun Miao, Rui Liao. 646-654 [doi]
• An Approach for Needle Based Optical Coherence Elastography MeasurementsSarah Latus, Christoph Otte, Matthias Schlüter, Josua Rehra, Kevin Bizon, Hinnerk Schulz-Hildebrandt, Thore Saathoff, Gereon Hüttmann, Alexander Schlaefer. 655-663 [doi]
• Concurrent Segmentation and Localization for Tracking of Surgical InstrumentsIro Laina, Nicola Rieke, Christian Rupprecht, Josué Page Vizcaíno, Abouzar Eslami, Federico Tombari, Nassir Navab. 664-672 [doi]
• Surgical Soundtracks: Towards Automatic Musical Augmentation of Surgical ProceduresSasan Matinfar, M. Ali Nasseri, Ulrich Eck, Hessam Roodaki, Nassir Navab 0002, Chris P. Lohmann, Mathias Maier, Nassir Navab. 673-681 [doi]
• Precise Ultrasound Bone Registration with Learning-Based Segmentation and Speed of Sound CalibrationMehrdad Salehi, Raphael Prevost, José Luis Moctezuma, Nassir Navab, Wolfgang Wein. 682-690 [doi]
• Convolutional Neural Network and In-Painting Techniques for the Automatic Assessment of Scoliotic Spine Surgery from Biplanar RadiographsBenjamin Aubert, P. A. Vidal, Stefan Parent, Thierry Cresson, Carlos Vazquez, Jacques A. de Guise. 691-699 [doi]
• A Novel Automatic Segmentation Method to Quantify the Effects of Spinal Cord Injury on Human Thigh Muscles and Adipose TissueSamineh Mesbah, Ahmed Shalaby, Sean Stills, Ahmed Soliman, Andrea Willhite, Susan Harkema, Enrico Rejc, Ayman El-Baz. 703-711 [doi]
• OptiC: Robust and Automatic Spinal Cord Localization on a Large Variety of MRI Data Using a Distance Transform Based Global OptimizationCharley Gros, Benjamin De Leener, Sara M. Dupont, Allan R. Martin, Michael G. Fehlings, Rohit Bakshi, Subhash Tummala, Vincent Auclair, Donald G. McLaren, Virginie Callot, Michaël Sdika, Julien Cohen-Adad. 712-719 [doi]
• Joint Craniomaxillofacial Bone Segmentation and Landmark Digitization by Context-Guided Fully Convolutional NetworksJun Zhang, Mingxia Liu, Li Wang, Si Chen, Peng Yuan, Jianfu Li, Steve Guo-Fang Shen, Zhen Tang, Ken Chung Chen, James J. Xia, Dinggang Shen. 720-728 [doi]
• Online Statistical Inference for Large-Scale Binary ImagesMoo K. Chung, Ying Ji Chuang, Houri K. Vorperian. 729-736 [doi]
• Short Acquisition Time PET Quantification Using MRI-Based Pharmacokinetic Parameter SynthesisCatherine J. Scott, Jieqing Jiao, M. Jorge Cardoso, Andrew Melbourne, Enrico De Vita, David Thomas, Ninon Burgos, Pawel Markiewicz, Jonathan M. Schott, Brian F. Hutton, Sébastien Ourselin. 737-744 [doi]
• A Variational Approach to Sparse Model Error Estimation in Cardiac Electrophysiological ImagingSandesh Ghimire, John L. Sapp, Milan Horacek, Linwei Wang. 745-753 [doi]
• Data-Driven Rank Aggregation with Application to Grand ChallengesJames Fishbaugh, Marcel Prastawa, Bo Wang, Patrick Reynolds, Stephen R. Aylward, Guido Gerig. 754-762 [doi]
• Benchmarking Quantitative Imaging Biomarker Measurement Methods Without a Gold StandardHennadii Madan, Franjo Pernus, Ziga Spiclin. 763-771 [doi]